No. words: 1565; after pruning: 1539


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.0 (1,1:992)  536  0.00 0.17 0.17  UCD015F_C07_BE490763Td05P025H10P012G121F1_059.ab1      227   798 (0)  C UCD015R_C07_BE490763Td05P025H10P012G121R1_059.ab1   (0)   767   196 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1    UCD015F_C07_BE490763Td05P025H10P012G121F1_059.ab1     1 
  478  C UCD015R_C07_BE490763Td05P025H10P012G121R1_059.ab1   516 
  482    UCD015F_C07_BE490763Td05P025H10P012G121F1_059.ab1   482 
  502  C UCD015R_C07_BE490763Td05P025H10P012G121R1_059.ab1   492 
  514    UCD015F_C07_BE490763Td05P025H10P012G121F1_059.ab1   514 
  530  C UCD015R_C07_BE490763Td05P025H10P012G121R1_059.ab1   464 
  534    UCD015F_C07_BE490763Td05P025H10P012G121F1_059.ab1   534 
  550  C UCD015R_C07_BE490763Td05P025H10P012G121R1_059.ab1   444 
  554    UCD015F_C07_BE490763Td05P025H10P012G121F1_059.ab1   554 
  558  C UCD015R_C07_BE490763Td05P025H10P012G121R1_059.ab1   436 
Contig length: old 993, new 993

Contig length: old 993, new 993
New start: 0