No. words: 1225; after pruning: 1199


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.3 (1,1:887)  315  0.30 0.00 0.00  UCD028F_A11_BE490763Td07P025A11P036B031F1_095.ab1       35   371 (0)  C UCD028R_A11_BE490763Td07P025A11P036B031R1_095.ab1   (0)   854   518 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  166 nodes

 85 str. conn. components

Path
    1    UCD028F_A11_BE490763Td07P025A11P036B031F1_095.ab1     1 
  158  C UCD028R_A11_BE490763Td07P025A11P036B031R1_095.ab1   731 
  162    UCD028F_A11_BE490763Td07P025A11P036B031F1_095.ab1   162 
  190  C UCD028R_A11_BE490763Td07P025A11P036B031R1_095.ab1   699 
  214    UCD028F_A11_BE490763Td07P025A11P036B031F1_095.ab1   214 
  222  C UCD028R_A11_BE490763Td07P025A11P036B031R1_095.ab1   667 
  258    UCD028F_A11_BE490763Td07P025A11P036B031F1_095.ab1   258 
  266  C UCD028R_A11_BE490763Td07P025A11P036B031R1_095.ab1   623 
Contig length: old 888, new 888

Contig length: old 888, new 888
New start: 0