No. words: 1393; after pruning: 1367


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.3 (1,1:1006)  343  2.07 0.00 0.00  UCD015F_G07_BE490763Td09P025H10P012G121F1_051.ab1      312   697 (0)  C UCD015R_G07_BE490763Td09P025H10P012G121R1_051.ab1   (0)   696   311 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  172 nodes

 88 str. conn. components

Path
    1    UCD015F_G07_BE490763Td09P025H10P012G121F1_051.ab1     1 
  367  C UCD015R_G07_BE490763Td09P025H10P012G121R1_051.ab1   641 
  413    UCD015F_G07_BE490763Td09P025H10P012G121F1_051.ab1   413 
  417  C UCD015R_G07_BE490763Td09P025H10P012G121R1_051.ab1   591 
Contig length: old 1007, new 1007

Contig length: old 1007, new 1007
New start: 0