No. words: 801; after pruning: 762


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.8 (1,1:-8)  212  0.00 0.00 0.00  UCD010R_A06_BE495991Ta13P021G04P025D121R1_048.ab1        1   219 (0)    UCD020R_A06_BE495991Ta13P021G04P025D121R2_048.ab1        9   227 (66) *
Merge:(0)    3    0.0 4.6 (2,1:227)  205  0.00 0.00 0.46  UCD010R_A06_BE495991Ta13P021G04P025D121R1_048.ab1        1   217 (2)  C UCD020F_A06_BE495991Ta13P021G04P025D121F2_048.ab1   (62)   227    12 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 3       1        0

Offset
  0       2 
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  322 nodes

 113 str. conn. components

Path
    1  C UCD020F_A06_BE495991Ta13P021G04P025D121F2_048.ab1   289 
   90    UCD020R_A06_BE495991Ta13P021G04P025D121R2_048.ab1    36 
  101  C UCD020F_A06_BE495991Ta13P021G04P025D121F2_048.ab1   189 
  142    UCD020R_A06_BE495991Ta13P021G04P025D121R2_048.ab1    88 
  150  C UCD020F_A06_BE495991Ta13P021G04P025D121F2_048.ab1   140 
  169    UCD020R_A06_BE495991Ta13P021G04P025D121R2_048.ab1   115 
  173  C UCD020F_A06_BE495991Ta13P021G04P025D121F2_048.ab1   117 
  194    UCD020R_A06_BE495991Ta13P021G04P025D121R2_048.ab1   140 
  209  C UCD020F_A06_BE495991Ta13P021G04P025D121F2_048.ab1    81 
  218    UCD020R_A06_BE495991Ta13P021G04P025D121R2_048.ab1   164 
  234  C UCD020F_A06_BE495991Ta13P021G04P025D121F2_048.ab1    56 
  241    UCD020R_A06_BE495991Ta13P021G04P025D121R2_048.ab1   187 
Contig length: old 346, new 347

Contig length: old 347, new 347
New start: 0