No. words: 1007; after pruning: 955


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    
Merge:(0)    0    0.0 2.4 (1,1:230)  129  2.00 0.00 0.00  UCD010R_E06_BE495991Ta17P021G04P025D121R1_040.ab1        1   150 (0)  C UCD020F_E06_BE495991Ta17P021G04P025D121F2_040.ab1   (55)   231    82 *

Pass: 1
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.9 (2,1:213)  259  0.00 0.00 0.00  UCD020F_E06_BE495991Ta17P021G04P025D121F2_040.ab1       18   286 (0)    UCD010F_E06_BE495991Ta17P021G04P025D121F1_040.ab1        1   269 (22) *
Merge:(0)    0    0.0 4.0 (3,1:4)  198  0.00 0.48 0.00  UCD010F_E06_BE495991Ta17P021G04P025D121F1_040.ab1        1   210 (81)  C UCD020R_E06_BE495991Ta17P021G04P025D121R2_040.ab1   (69)   211     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       3 
  1       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  530 nodes

 153 str. conn. components

Path
    1  C UCD010F_E06_BE495991Ta17P021G04P025D121F1_040.ab1   291 
   28  C UCD020F_E06_BE495991Ta17P021G04P025D121F2_040.ab1   281 
  115    UCD020R_E06_BE495991Ta17P021G04P025D121R2_040.ab1    34 
  117  C UCD020F_E06_BE495991Ta17P021G04P025D121F2_040.ab1   192 
  165    UCD020R_E06_BE495991Ta17P021G04P025D121R2_040.ab1    84 
  173  C UCD010F_E06_BE495991Ta17P021G04P025D121F1_040.ab1   119 
  183    UCD020R_E06_BE495991Ta17P021G04P025D121R2_040.ab1   102 
  189  C UCD010F_E06_BE495991Ta17P021G04P025D121F1_040.ab1   103 
  223    UCD020R_E06_BE495991Ta17P021G04P025D121R2_040.ab1   142 
  231  C UCD010F_E06_BE495991Ta17P021G04P025D121F1_040.ab1    61 
  232  C UCD020F_E06_BE495991Ta17P021G04P025D121F2_040.ab1    77 
  240  C UCD010F_E06_BE495991Ta17P021G04P025D121F1_040.ab1    52 
  243    UCD020R_E06_BE495991Ta17P021G04P025D121R2_040.ab1   162 
  255  C UCD020F_E06_BE495991Ta17P021G04P025D121F2_040.ab1    54 
  263    UCD020R_E06_BE495991Ta17P021G04P025D121R2_040.ab1   182 
  267  C UCD010F_E06_BE495991Ta17P021G04P025D121F1_040.ab1    25 
  268  C UCD020F_E06_BE495991Ta17P021G04P025D121F2_040.ab1    41 
  271    UCD020R_E06_BE495991Ta17P021G04P025D121R2_040.ab1   190 
Contig length: old 361, new 361

Contig length: old 361, new 361
New start: 0