No. words: 518; after pruning: 492


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.6 (1,1:165)  159  0.00 0.00 0.00  UCD020F_G06_BE495991Ta19P021G04P025D121F2_036.ab1        1   166 (101)  C UCD020R_G06_BE495991Ta19P021G04P025D121R2_036.ab1   (85)   166     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  84 nodes

 44 str. conn. components

Path
    1  C UCD020R_G06_BE495991Ta19P021G04P025D121R2_036.ab1   251 
  101    UCD020F_G06_BE495991Ta19P021G04P025D121F2_036.ab1    16 
  105  C UCD020R_G06_BE495991Ta19P021G04P025D121R2_036.ab1   147 
  129    UCD020F_G06_BE495991Ta19P021G04P025D121F2_036.ab1    44 
  145  C UCD020R_G06_BE495991Ta19P021G04P025D121R2_036.ab1   107 
  149    UCD020F_G06_BE495991Ta19P021G04P025D121F2_036.ab1    64 
  169  C UCD020R_G06_BE495991Ta19P021G04P025D121R2_036.ab1    83 
  185    UCD020F_G06_BE495991Ta19P021G04P025D121F2_036.ab1   100 
  193  C UCD020R_G06_BE495991Ta19P021G04P025D121R2_036.ab1    59 
  201    UCD020F_G06_BE495991Ta19P021G04P025D121F2_036.ab1   116 
  221  C UCD020R_G06_BE495991Ta19P021G04P025D121R2_036.ab1    31 
  229    UCD020F_G06_BE495991Ta19P021G04P025D121F2_036.ab1   144 
Contig length: old 352, new 352

Contig length: old 352, new 352
New start: 0