No. words: 1083; after pruning: 1031


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    
Merge:(0)    0    0.0 4.6 (1,1:239)  199  0.00 0.00 0.00  UCD010R_H04_BE495991Td04P021G04P025D121R1_018.ab1        1   207 (0)  C UCD020F_H04_BE495991Td04P021G04P025D121F2_018.ab1   (52)   240    34 *

Pass: 1
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.0 (2,1:238)  279  0.00 0.00 0.34  UCD020F_H04_BE495991Td04P021G04P025D121F2_018.ab1        1   292 (0)    UCD010F_H04_BE495991Td04P021G04P025D121F1_018.ab1        1   291 (11) *
Merge:(0)    0    0.0 5.4 (3,1:-4)  237  0.00 0.00 0.00  UCD020F_H04_BE495991Td04P021G04P025D121F2_018.ab1        1   244 (48)  C UCD020R_H04_BE495991Td04P021G04P025D121R2_018.ab1   (38)   244     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       5 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  692 nodes

 197 str. conn. components

Path
    1  C UCD010F_H04_BE495991Td04P021G04P025D121F1_018.ab1   302 
   18  C UCD020F_H04_BE495991Td04P021G04P025D121F2_018.ab1   286 
   26  C UCD010F_H04_BE495991Td04P021G04P025D121F1_018.ab1   277 
  179    UCD020R_H04_BE495991Td04P021G04P025D121R2_018.ab1   120 
  187  C UCD010F_H04_BE495991Td04P021G04P025D121F1_018.ab1   116 
  195    UCD020R_H04_BE495991Td04P021G04P025D121R2_018.ab1   136 
  199  C UCD010F_H04_BE495991Td04P021G04P025D121F1_018.ab1   104 
  203  C UCD020F_H04_BE495991Td04P021G04P025D121F2_018.ab1   101 
  219  C UCD010F_H04_BE495991Td04P021G04P025D121F1_018.ab1    84 
  222  C UCD020F_H04_BE495991Td04P021G04P025D121F2_018.ab1    82 
  224    UCD020R_H04_BE495991Td04P021G04P025D121R2_018.ab1   165 
  236  C UCD020F_H04_BE495991Td04P021G04P025D121F2_018.ab1    68 
  246  C UCD010F_H04_BE495991Td04P021G04P025D121F1_018.ab1    57 
  251  C UCD020F_H04_BE495991Td04P021G04P025D121F2_018.ab1    53 
  259  C UCD010F_H04_BE495991Td04P021G04P025D121F1_018.ab1    44 
  263    UCD020R_H04_BE495991Td04P021G04P025D121R2_018.ab1   204 
  268  C UCD020F_H04_BE495991Td04P021G04P025D121F2_018.ab1    36 
  270  C UCD010F_H04_BE495991Td04P021G04P025D121F1_018.ab1    33 
  275    UCD020R_H04_BE495991Td04P021G04P025D121R2_018.ab1   216 
Contig length: old 341, new 341

Contig length: old 341, new 341
New start: 0