No. words: 339; after pruning: 313


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)   16   -4.5 -4.5 (1,1:-42)   53 18.85 0.00 0.00  UCD018F_D12_BE498358LD10P028A04A101F1_090.ab1       17   138 (21)    UCD018R_D12_BE498358LD10P028A04A101R1_090.ab1       59   180 (0) *
  Worst pair: offset 0 
LLR breakdown: discreps: -5.6 (<20 part: -5.6 (#=23), >20:0.0 (#=0); in HQ: -5.6, out HQ 0.0), match: 2.2  lead: -1.2  total: -4.6   53 18.85 0.00 0.00  UCD018F_D12_BE498358LD10P028A04A101F1_090.ab1       17   138 (21)    UCD018R_D12_BE498358LD10P028A04A101R1_090.ab1       59   180 (0) *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.5       1        0

Gap   # merges  # failures
 size
16       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  16 nodes

 10 str. conn. components

Path
    1    UCD018R_D12_BE498358LD10P028A04A101R1_090.ab1     1 
   81    UCD018F_D12_BE498358LD10P028A04A101F1_090.ab1    39 
Contig length: old 201, new 201

Contig length: old 201, new 201
New start: 0 
S Change at: 65; seg lengths: entry 1, contig 1
S Change at: 74; seg lengths: entry 4, contig 4
S Change at: 123; seg lengths: entry 5, contig 5
S Change at: 171; seg lengths: entry 2, contig 2