No. words: 1055; after pruning: 1029


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 6.5 (1,1:355)  335  0.00 0.28 0.00  UCD024F_H05_BE498371LD04P028A06P028A121F1_033.ab1        3   356 (156)  C UCD024R_H05_BE498371LD04P028A06P028A121R1_033.ab1   (188)   355     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  176 nodes

 90 str. conn. components

Path
    1  C UCD024R_H05_BE498371LD04P028A06P028A121R1_033.ab1   543 
  270    UCD024F_H05_BE498371LD04P028A06P028A121F1_033.ab1    83 
  282  C UCD024R_H05_BE498371LD04P028A06P028A121R1_033.ab1   262 
  302    UCD024F_H05_BE498371LD04P028A06P028A121F1_033.ab1   115 
  330  C UCD024R_H05_BE498371LD04P028A06P028A121R1_033.ab1   214 
  390    UCD024F_H05_BE498371LD04P028A06P028A121F1_033.ab1   203 
  442  C UCD024R_H05_BE498371LD04P028A06P028A121R1_033.ab1   102 
  450    UCD024F_H05_BE498371LD04P028A06P028A121F1_033.ab1   263 
  506  C UCD024R_H05_BE498371LD04P028A06P028A121R1_033.ab1    38 
  510    UCD024F_H05_BE498371LD04P028A06P028A121F1_033.ab1   323 
Contig length: old 699, new 699

Contig length: old 699, new 699
New start: 0