No. words: 1524; after pruning: 1498


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.5 (1,1:744)  725  0.00 0.00 0.00  UCD003F_H03_BE498566AS01P001B06B121F1_028.ab1        1   745 (26)  C UCD003R_H03_BE498566AS01P001B06B121R1_028.ab1   (8)   745     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  374 nodes

 189 str. conn. components

Path
    1  C UCD003R_H03_BE498566AS01P001B06B121R1_028.ab1   753 
   12    UCD003F_H03_BE498566AS01P001B06B121F1_028.ab1     4 
   16  C UCD003R_H03_BE498566AS01P001B06B121R1_028.ab1   738 
   24    UCD003F_H03_BE498566AS01P001B06B121F1_028.ab1    16 
   60  C UCD003R_H03_BE498566AS01P001B06B121R1_028.ab1   694 
   64    UCD003F_H03_BE498566AS01P001B06B121F1_028.ab1    56 
  284  C UCD003R_H03_BE498566AS01P001B06B121R1_028.ab1   470 
  288    UCD003F_H03_BE498566AS01P001B06B121F1_028.ab1   280 
  328  C UCD003R_H03_BE498566AS01P001B06B121R1_028.ab1   426 
  332    UCD003F_H03_BE498566AS01P001B06B121F1_028.ab1   324 
  348  C UCD003R_H03_BE498566AS01P001B06B121R1_028.ab1   406 
  380    UCD003F_H03_BE498566AS01P001B06B121F1_028.ab1   372 
  396  C UCD003R_H03_BE498566AS01P001B06B121R1_028.ab1   358 
  408    UCD003F_H03_BE498566AS01P001B06B121F1_028.ab1   400 
  420  C UCD003R_H03_BE498566AS01P001B06B121R1_028.ab1   334 
  436    UCD003F_H03_BE498566AS01P001B06B121F1_028.ab1   428 
  440  C UCD003R_H03_BE498566AS01P001B06B121R1_028.ab1   314 
  732    UCD003F_H03_BE498566AS01P001B06B121F1_028.ab1   724 
  736  C UCD003R_H03_BE498566AS01P001B06B121R1_028.ab1    18 
  748    UCD003F_H03_BE498566AS01P001B06B121F1_028.ab1   740 
Contig length: old 779, new 779

Contig length: old 779, new 779
New start: 0