No. words: 1539; after pruning: 1513


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.8 (1,1:753)  722  0.13 0.13 0.13  UCD003F_A04_BE498566AS02P001B06B121F1_021.ab1        1   754 (22)  C UCD003R_A04_BE498566AS02P001B06B121R1_021.ab1   (9)   754     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  368 nodes

 186 str. conn. components

Path
    1  C UCD003R_A04_BE498566AS02P001B06B121R1_021.ab1   763 
   25    UCD003F_A04_BE498566AS02P001B06B121F1_021.ab1    15 
   61  C UCD003R_A04_BE498566AS02P001B06B121R1_021.ab1   703 
   65    UCD003F_A04_BE498566AS02P001B06B121F1_021.ab1    55 
  185  C UCD003R_A04_BE498566AS02P001B06B121R1_021.ab1   579 
  189    UCD003F_A04_BE498566AS02P001B06B121F1_021.ab1   179 
  337  C UCD003R_A04_BE498566AS02P001B06B121R1_021.ab1   427 
  341    UCD003F_A04_BE498566AS02P001B06B121F1_021.ab1   331 
  353  C UCD003R_A04_BE498566AS02P001B06B121R1_021.ab1   411 
  361    UCD003F_A04_BE498566AS02P001B06B121F1_021.ab1   351 
  373  C UCD003R_A04_BE498566AS02P001B06B121R1_021.ab1   391 
  385    UCD003F_A04_BE498566AS02P001B06B121F1_021.ab1   375 
  433  C UCD003R_A04_BE498566AS02P001B06B121R1_021.ab1   331 
  457    UCD003F_A04_BE498566AS02P001B06B121F1_021.ab1   447 
  461  C UCD003R_A04_BE498566AS02P001B06B121R1_021.ab1   303 
  549    UCD003F_A04_BE498566AS02P001B06B121F1_021.ab1   539 
  557  C UCD003R_A04_BE498566AS02P001B06B121R1_021.ab1   207 
  601    UCD003F_A04_BE498566AS02P001B06B121F1_021.ab1   591 
  609  C UCD003R_A04_BE498566AS02P001B06B121R1_021.ab1   155 
  749    UCD003F_A04_BE498566AS02P001B06B121F1_021.ab1   739 
Contig length: old 785, new 786

Contig length: old 786, new 786
New start: 0