No. words: 1449; after pruning: 1423


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.7 (1,1:778)  634  0.75 0.00 0.00  UCD003F_F03_BE498566AT01P001B06B121F1_027.ab1       80   749 (0)  C UCD003R_F03_BE498566AT01P001B06B121R1_027.ab1   (0)   700    31 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  322 nodes

 163 str. conn. components

Path
    1    UCD003F_F03_BE498566AT01P001B06B121F1_027.ab1     1 
  220  C UCD003R_F03_BE498566AT01P001B06B121R1_027.ab1   560 
  232    UCD003F_F03_BE498566AT01P001B06B121F1_027.ab1   232 
  240  C UCD003R_F03_BE498566AT01P001B06B121R1_027.ab1   540 
  248    UCD003F_F03_BE498566AT01P001B06B121F1_027.ab1   248 
  252  C UCD003R_F03_BE498566AT01P001B06B121R1_027.ab1   528 
  324    UCD003F_F03_BE498566AT01P001B06B121F1_027.ab1   324 
  328  C UCD003R_F03_BE498566AT01P001B06B121R1_027.ab1   452 
Contig length: old 779, new 779

Contig length: old 779, new 779
New start: 0