No. words: 1529; after pruning: 1503


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.2 (1,1:784)  714  0.00 0.00 0.13  UCD003F_G03_BE498566AT02P001B06B121F1_020.ab1       39   782 (0)  C UCD003R_G03_BE498566AT02P001B06B121R1_020.ab1   (0)   747     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  366 nodes

 185 str. conn. components

Path
    1    UCD003F_G03_BE498566AT02P001B06B121F1_020.ab1     1 
  298  C UCD003R_G03_BE498566AT02P001B06B121R1_020.ab1   488 
  302    UCD003F_G03_BE498566AT02P001B06B121F1_020.ab1   302 
  350  C UCD003R_G03_BE498566AT02P001B06B121R1_020.ab1   436 
  354    UCD003F_G03_BE498566AT02P001B06B121F1_020.ab1   354 
  370  C UCD003R_G03_BE498566AT02P001B06B121R1_020.ab1   416 
  382    UCD003F_G03_BE498566AT02P001B06B121F1_020.ab1   382 
  434  C UCD003R_G03_BE498566AT02P001B06B121R1_020.ab1   352 
  438    UCD003F_G03_BE498566AT02P001B06B121F1_020.ab1   438 
  442  C UCD003R_G03_BE498566AT02P001B06B121R1_020.ab1   344 
Contig length: old 785, new 785

Contig length: old 785, new 786
New start: 0 
I Change at: 772; seg lengths: entry 1, contig 0