No. words: 1586; after pruning: 1560


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 14.1 (1,1:749)  709  0.27 0.00 0.27  UCD003F_B04_BE498566LD01P001B06B121F1_029.ab1        5   750 (14)  C UCD003R_B04_BE498566LD01P001B06B121R1_029.ab1   (78)   744     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  364 nodes

 184 str. conn. components

Path
    1  C UCD003R_B04_BE498566LD01P001B06B121R1_029.ab1   822 
   82    UCD003F_B04_BE498566LD01P001B06B121F1_029.ab1     8 
   90  C UCD003R_B04_BE498566LD01P001B06B121R1_029.ab1   733 
   94    UCD003F_B04_BE498566LD01P001B06B121F1_029.ab1    20 
   98  C UCD003R_B04_BE498566LD01P001B06B121R1_029.ab1   725 
  106    UCD003F_B04_BE498566LD01P001B06B121F1_029.ab1    32 
  166  C UCD003R_B04_BE498566LD01P001B06B121R1_029.ab1   657 
  178    UCD003F_B04_BE498566LD01P001B06B121F1_029.ab1   105 
  182  C UCD003R_B04_BE498566LD01P001B06B121R1_029.ab1   641 
  186    UCD003F_B04_BE498566LD01P001B06B121F1_029.ab1   113 
  190  C UCD003R_B04_BE498566LD01P001B06B121R1_029.ab1   633 
  194    UCD003F_B04_BE498566LD01P001B06B121F1_029.ab1   121 
  214  C UCD003R_B04_BE498566LD01P001B06B121R1_029.ab1   609 
  241    UCD003F_B04_BE498566LD01P001B06B121F1_029.ab1   168 
  305  C UCD003R_B04_BE498566LD01P001B06B121R1_029.ab1   518 
  317    UCD003F_B04_BE498566LD01P001B06B121F1_029.ab1   244 
  341  C UCD003R_B04_BE498566LD01P001B06B121R1_029.ab1   482 
  345    UCD003F_B04_BE498566LD01P001B06B121F1_029.ab1   272 
  353  C UCD003R_B04_BE498566LD01P001B06B121R1_029.ab1   470 
  357    UCD003F_B04_BE498566LD01P001B06B121F1_029.ab1   284 
  377  C UCD003R_B04_BE498566LD01P001B06B121R1_029.ab1   446 
  381    UCD003F_B04_BE498566LD01P001B06B121F1_029.ab1   308 
  393  C UCD003R_B04_BE498566LD01P001B06B121R1_029.ab1   430 
  421    UCD003F_B04_BE498566LD01P001B06B121F1_029.ab1   348 
  425  C UCD003R_B04_BE498566LD01P001B06B121R1_029.ab1   398 
  445    UCD003F_B04_BE498566LD01P001B06B121F1_029.ab1   372 
  449  C UCD003R_B04_BE498566LD01P001B06B121R1_029.ab1   374 
  525    UCD003F_B04_BE498566LD01P001B06B121F1_029.ab1   452 
  529  C UCD003R_B04_BE498566LD01P001B06B121R1_029.ab1   294 
  751    UCD003F_B04_BE498566LD01P001B06B121F1_029.ab1   678 
  759  C UCD003R_B04_BE498566LD01P001B06B121R1_029.ab1    64 
  775    UCD003F_B04_BE498566LD01P001B06B121F1_029.ab1   702 
  779  C UCD003R_B04_BE498566LD01P001B06B121R1_029.ab1    44 
  791    UCD003F_B04_BE498566LD01P001B06B121F1_029.ab1   718 
  795  C UCD003R_B04_BE498566LD01P001B06B121R1_029.ab1    28 
  799    UCD003F_B04_BE498566LD01P001B06B121F1_029.ab1   726 
  803  C UCD003R_B04_BE498566LD01P001B06B121R1_029.ab1    20 
  807    UCD003F_B04_BE498566LD01P001B06B121F1_029.ab1   734 
Contig length: old 836, new 837

Contig length: old 837, new 837
New start: 0