No. words: 1532; after pruning: 1506


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
 -766  -726  0 38    187     S -726- -540
Fail: (1)  186    0.0 8.8 (1,1:726)  517  0.18 0.00 0.37  UCD003F_C04_BE498566LD02P001B06B121F1_022.ab1      187   728 (37)  C UCD003R_C04_BE498566LD02P001B06B121R1_022.ab1   (227)   540     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       0        1

Gap   # merges  # failures
 size
186       0        1

Offset
  0       1 

Pass 4
             Gap  Score    
 -766  -726  0 38    187     S -726- -540
Fail: (1)  186    0.0 8.8 (1,1:726)  517  0.18 0.00 0.37  UCD003F_C04_BE498566LD02P001B06B121F1_022.ab1      187   728 (37)  C UCD003R_C04_BE498566LD02P001B06B121R1_022.ab1   (227)   540     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       0        1

Gap   # merges  # failures
 size
186       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    UCD003R_C04_BE498566LD02P001B06B121R1_022.ab1     1 
Contig length: old 767, new 767

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    UCD003F_C04_BE498566LD02P001B06B121F1_022.ab1     1 
Contig length: old 765, new 765