No. words: 1637; after pruning: 1611


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.2 (1,1:751)  721  0.00 0.13 0.13  UCD003F_D04_BE498566LD03P001B06B121F1_030.ab1        1   752 (80)  C UCD003R_D04_BE498566LD03P001B06B121R1_030.ab1   (53)   752     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  372 nodes

 188 str. conn. components

Path
    1  C UCD003R_D04_BE498566LD03P001B06B121R1_030.ab1   805 
   81    UCD003F_D04_BE498566LD03P001B06B121F1_030.ab1    27 
  301  C UCD003R_D04_BE498566LD03P001B06B121R1_030.ab1   505 
  305    UCD003F_D04_BE498566LD03P001B06B121F1_030.ab1   251 
  353  C UCD003R_D04_BE498566LD03P001B06B121R1_030.ab1   453 
  357    UCD003F_D04_BE498566LD03P001B06B121F1_030.ab1   303 
  401  C UCD003R_D04_BE498566LD03P001B06B121R1_030.ab1   405 
  405    UCD003F_D04_BE498566LD03P001B06B121F1_030.ab1   351 
  421  C UCD003R_D04_BE498566LD03P001B06B121R1_030.ab1   385 
  425    UCD003F_D04_BE498566LD03P001B06B121F1_030.ab1   371 
  441  C UCD003R_D04_BE498566LD03P001B06B121R1_030.ab1   365 
  469    UCD003F_D04_BE498566LD03P001B06B121F1_030.ab1   415 
  473  C UCD003R_D04_BE498566LD03P001B06B121R1_030.ab1   333 
  549    UCD003F_D04_BE498566LD03P001B06B121F1_030.ab1   495 
  553  C UCD003R_D04_BE498566LD03P001B06B121R1_030.ab1   253 
  609    UCD003F_D04_BE498566LD03P001B06B121F1_030.ab1   555 
  617  C UCD003R_D04_BE498566LD03P001B06B121R1_030.ab1   189 
  621    UCD003F_D04_BE498566LD03P001B06B121F1_030.ab1   567 
  625  C UCD003R_D04_BE498566LD03P001B06B121R1_030.ab1   181 
  637    UCD003F_D04_BE498566LD03P001B06B121F1_030.ab1   583 
  641  C UCD003R_D04_BE498566LD03P001B06B121R1_030.ab1   165 
  777    UCD003F_D04_BE498566LD03P001B06B121F1_030.ab1   723 
  781  C UCD003R_D04_BE498566LD03P001B06B121R1_030.ab1    25 
  789    UCD003F_D04_BE498566LD03P001B06B121F1_030.ab1   735 
Contig length: old 885, new 886

Contig length: old 886, new 886
New start: 0