No. words: 1636; after pruning: 1596


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.7 (1,1:765)  731  0.26 0.13 0.13  UCD003F_E04_BE498566LD04P001B06B121F1_023.ab1        1   766 (56)  C UCD003R_E04_BE498566LD04P001B06B121R1_023.ab1   (48)   766     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  374 nodes

 189 str. conn. components

Path
    1  C UCD003R_E04_BE498566LD04P001B06B121R1_023.ab1   814 
   59    UCD003F_E04_BE498566LD04P001B06B121F1_023.ab1    10 
   63  C UCD003R_E04_BE498566LD04P001B06B121R1_023.ab1   752 
   71    UCD003F_E04_BE498566LD04P001B06B121F1_023.ab1    22 
  375  C UCD003R_E04_BE498566LD04P001B06B121R1_023.ab1   440 
  383    UCD003F_E04_BE498566LD04P001B06B121F1_023.ab1   334 
  391  C UCD003R_E04_BE498566LD04P001B06B121R1_023.ab1   424 
  419    UCD003F_E04_BE498566LD04P001B06B121F1_023.ab1   370 
  439  C UCD003R_E04_BE498566LD04P001B06B121R1_023.ab1   376 
  447    UCD003F_E04_BE498566LD04P001B06B121F1_023.ab1   398 
  455  C UCD003R_E04_BE498566LD04P001B06B121R1_023.ab1   360 
  503    UCD003F_E04_BE498566LD04P001B06B121F1_023.ab1   454 
  507  C UCD003R_E04_BE498566LD04P001B06B121R1_023.ab1   308 
  603    UCD003F_E04_BE498566LD04P001B06B121F1_023.ab1   554 
  607  C UCD003R_E04_BE498566LD04P001B06B121R1_023.ab1   208 
  619    UCD003F_E04_BE498566LD04P001B06B121F1_023.ab1   570 
  623  C UCD003R_E04_BE498566LD04P001B06B121R1_023.ab1   192 
  679    UCD003F_E04_BE498566LD04P001B06B121F1_023.ab1   630 
  683  C UCD003R_E04_BE498566LD04P001B06B121R1_023.ab1   132 
  707    UCD003F_E04_BE498566LD04P001B06B121F1_023.ab1   658 
  711  C UCD003R_E04_BE498566LD04P001B06B121R1_023.ab1   104 
  771    UCD003F_E04_BE498566LD04P001B06B121F1_023.ab1   722 
  775  C UCD003R_E04_BE498566LD04P001B06B121R1_023.ab1    40 
  787    UCD003F_E04_BE498566LD04P001B06B121F1_023.ab1   738 
Contig length: old 870, new 871

Contig length: old 871, new 871
New start: 0