No. words: 1510; after pruning: 1484


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.5 (1,1:737)  709  0.14 0.14 0.00  UCD003F_G04_BE498566LD06P001B06B121F1_024.ab1        1   738 (29)  C UCD003R_G04_BE498566LD06P001B06B121R1_024.ab1   (4)   739     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  364 nodes

 184 str. conn. components

Path
    1  C UCD003R_G04_BE498566LD06P001B06B121R1_024.ab1   743 
   29    UCD003F_G04_BE498566LD06P001B06B121F1_024.ab1    24 
   33  C UCD003R_G04_BE498566LD06P001B06B121R1_024.ab1   711 
   43    UCD003F_G04_BE498566LD06P001B06B121F1_024.ab1    38 
  307  C UCD003R_G04_BE498566LD06P001B06B121R1_024.ab1   437 
  311    UCD003F_G04_BE498566LD06P001B06B121F1_024.ab1   306 
  335  C UCD003R_G04_BE498566LD06P001B06B121R1_024.ab1   409 
  339    UCD003F_G04_BE498566LD06P001B06B121F1_024.ab1   334 
  351  C UCD003R_G04_BE498566LD06P001B06B121R1_024.ab1   393 
  375    UCD003F_G04_BE498566LD06P001B06B121F1_024.ab1   370 
  391  C UCD003R_G04_BE498566LD06P001B06B121R1_024.ab1   353 
  407    UCD003F_G04_BE498566LD06P001B06B121F1_024.ab1   402 
  415  C UCD003R_G04_BE498566LD06P001B06B121R1_024.ab1   329 
  439    UCD003F_G04_BE498566LD06P001B06B121F1_024.ab1   434 
  443  C UCD003R_G04_BE498566LD06P001B06B121R1_024.ab1   301 
  739    UCD003F_G04_BE498566LD06P001B06B121F1_024.ab1   734 
Contig length: old 772, new 772

Contig length: old 772, new 772
New start: 0