No. words: 1635; after pruning: 1609


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.6 (1,1:752)  727  0.00 0.13 0.00  UCD003F_H04_BE498566LD07P001B06B121F1_032.ab1        1   753 (53)  C UCD003R_H04_BE498566LD07P001B06B121R1_032.ab1   (75)   754     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  374 nodes

 189 str. conn. components

Path
    1  C UCD003R_H04_BE498566LD07P001B06B121R1_032.ab1   829 
  104    UCD003F_H04_BE498566LD07P001B06B121F1_032.ab1    28 
  108  C UCD003R_H04_BE498566LD07P001B06B121R1_032.ab1   722 
  112    UCD003F_H04_BE498566LD07P001B06B121F1_032.ab1    36 
  376  C UCD003R_H04_BE498566LD07P001B06B121R1_032.ab1   454 
  380    UCD003F_H04_BE498566LD07P001B06B121F1_032.ab1   304 
  424  C UCD003R_H04_BE498566LD07P001B06B121R1_032.ab1   406 
  428    UCD003F_H04_BE498566LD07P001B06B121F1_032.ab1   352 
  496  C UCD003R_H04_BE498566LD07P001B06B121R1_032.ab1   334 
  504    UCD003F_H04_BE498566LD07P001B06B121F1_032.ab1   428 
  508  C UCD003R_H04_BE498566LD07P001B06B121R1_032.ab1   322 
  572    UCD003F_H04_BE498566LD07P001B06B121F1_032.ab1   496 
  576  C UCD003R_H04_BE498566LD07P001B06B121R1_032.ab1   254 
  700    UCD003F_H04_BE498566LD07P001B06B121F1_032.ab1   624 
  704  C UCD003R_H04_BE498566LD07P001B06B121R1_032.ab1   126 
  728    UCD003F_H04_BE498566LD07P001B06B121F1_032.ab1   652 
  732  C UCD003R_H04_BE498566LD07P001B06B121R1_032.ab1    98 
  800    UCD003F_H04_BE498566LD07P001B06B121F1_032.ab1   724 
  804  C UCD003R_H04_BE498566LD07P001B06B121R1_032.ab1    26 
  816    UCD003F_H04_BE498566LD07P001B06B121F1_032.ab1   740 
Contig length: old 882, new 882

Contig length: old 882, new 882
New start: 0