No. words: 1671; after pruning: 1645


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.7 (1,1:754)  728  0.00 0.13 0.00  UCD003F_A05_BE498566LD08P001B06B121F1_033.ab1        1   755 (60)  C UCD003R_A05_BE498566LD08P001B06B121R1_033.ab1   (100)   756     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  376 nodes

 190 str. conn. components

Path
    1  C UCD003R_A05_BE498566LD08P001B06B121R1_033.ab1   856 
  121    UCD003F_A05_BE498566LD08P001B06B121F1_033.ab1    20 
  125  C UCD003R_A05_BE498566LD08P001B06B121R1_033.ab1   732 
  129    UCD003F_A05_BE498566LD08P001B06B121F1_033.ab1    28 
  133  C UCD003R_A05_BE498566LD08P001B06B121R1_033.ab1   724 
  137    UCD003F_A05_BE498566LD08P001B06B121F1_033.ab1    36 
  469  C UCD003R_A05_BE498566LD08P001B06B121R1_033.ab1   388 
  473    UCD003F_A05_BE498566LD08P001B06B121F1_033.ab1   372 
  493  C UCD003R_A05_BE498566LD08P001B06B121R1_033.ab1   364 
  501    UCD003F_A05_BE498566LD08P001B06B121F1_033.ab1   400 
  521  C UCD003R_A05_BE498566LD08P001B06B121R1_033.ab1   336 
  597    UCD003F_A05_BE498566LD08P001B06B121F1_033.ab1   496 
  601  C UCD003R_A05_BE498566LD08P001B06B121R1_033.ab1   256 
  657    UCD003F_A05_BE498566LD08P001B06B121F1_033.ab1   556 
  665  C UCD003R_A05_BE498566LD08P001B06B121R1_033.ab1   192 
  841    UCD003F_A05_BE498566LD08P001B06B121F1_033.ab1   740 
  849  C UCD003R_A05_BE498566LD08P001B06B121R1_033.ab1     8 
  853    UCD003F_A05_BE498566LD08P001B06B121F1_033.ab1   752 
Contig length: old 916, new 916

Contig length: old 916, new 916
New start: 0