No. words: 1668; after pruning: 1642


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.5 (1,1:762)  728  0.00 0.13 0.26  UCD003F_B05_BE498566LD09P001B06B121F1_041.ab1        1   764 (65)  C UCD003R_B05_BE498566LD09P001B06B121R1_041.ab1   (76)   763     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  376 nodes

 190 str. conn. components

Path
    1  C UCD003R_B05_BE498566LD09P001B06B121R1_041.ab1   839 
   88    UCD003F_B05_BE498566LD09P001B06B121F1_041.ab1    11 
   92  C UCD003R_B05_BE498566LD09P001B06B121R1_041.ab1   748 
  100    UCD003F_B05_BE498566LD09P001B06B121F1_041.ab1    23 
  324  C UCD003R_B05_BE498566LD09P001B06B121R1_041.ab1   516 
  328    UCD003F_B05_BE498566LD09P001B06B121F1_041.ab1   251 
  348  C UCD003R_B05_BE498566LD09P001B06B121R1_041.ab1   492 
  352    UCD003F_B05_BE498566LD09P001B06B121F1_041.ab1   275 
  356  C UCD003R_B05_BE498566LD09P001B06B121R1_041.ab1   484 
  360    UCD003F_B05_BE498566LD09P001B06B121F1_041.ab1   283 
  376  C UCD003R_B05_BE498566LD09P001B06B121R1_041.ab1   464 
  380    UCD003F_B05_BE498566LD09P001B06B121F1_041.ab1   303 
  384  C UCD003R_B05_BE498566LD09P001B06B121R1_041.ab1   456 
  388    UCD003F_B05_BE498566LD09P001B06B121F1_041.ab1   311 
  396  C UCD003R_B05_BE498566LD09P001B06B121R1_041.ab1   444 
  404    UCD003F_B05_BE498566LD09P001B06B121F1_041.ab1   327 
  424  C UCD003R_B05_BE498566LD09P001B06B121R1_041.ab1   416 
  440    UCD003F_B05_BE498566LD09P001B06B121F1_041.ab1   363 
  444  C UCD003R_B05_BE498566LD09P001B06B121R1_041.ab1   396 
  448    UCD003F_B05_BE498566LD09P001B06B121F1_041.ab1   371 
  468  C UCD003R_B05_BE498566LD09P001B06B121R1_041.ab1   372 
  488    UCD003F_B05_BE498566LD09P001B06B121F1_041.ab1   411 
  508  C UCD003R_B05_BE498566LD09P001B06B121R1_041.ab1   332 
  572    UCD003F_B05_BE498566LD09P001B06B121F1_041.ab1   495 
  580  C UCD003R_B05_BE498566LD09P001B06B121R1_041.ab1   260 
  636    UCD003F_B05_BE498566LD09P001B06B121F1_041.ab1   559 
  640  C UCD003R_B05_BE498566LD09P001B06B121R1_041.ab1   200 
  732    UCD003F_B05_BE498566LD09P001B06B121F1_041.ab1   655 
  736  C UCD003R_B05_BE498566LD09P001B06B121R1_041.ab1   104 
  800    UCD003F_B05_BE498566LD09P001B06B121F1_041.ab1   723 
  804  C UCD003R_B05_BE498566LD09P001B06B121R1_041.ab1    36 
  812    UCD003F_B05_BE498566LD09P001B06B121F1_041.ab1   735 
  834  C UCD003R_B05_BE498566LD09P001B06B121R1_041.ab1     8 
  838    UCD003F_B05_BE498566LD09P001B06B121F1_041.ab1   761 
Contig length: old 905, new 906

Contig length: old 906, new 906
New start: 0