No. words: 1683; after pruning: 1643


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.4 (1,1:764)  734  0.00 0.13 0.13  UCD003F_C05_BE498566LD10P001B06B121F1_034.ab1        1   765 (80)  C UCD003R_C05_BE498566LD10P001B06B121R1_034.ab1   (73)   765     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  378 nodes

 191 str. conn. components

Path
    1  C UCD003R_C05_BE498566LD10P001B06B121R1_034.ab1   838 
  102    UCD003F_C05_BE498566LD10P001B06B121F1_034.ab1    28 
  422  C UCD003R_C05_BE498566LD10P001B06B121R1_034.ab1   417 
  446    UCD003F_C05_BE498566LD10P001B06B121F1_034.ab1   372 
  454  C UCD003R_C05_BE498566LD10P001B06B121R1_034.ab1   385 
  458    UCD003F_C05_BE498566LD10P001B06B121F1_034.ab1   384 
  462  C UCD003R_C05_BE498566LD10P001B06B121R1_034.ab1   377 
  490    UCD003F_C05_BE498566LD10P001B06B121F1_034.ab1   416 
  498  C UCD003R_C05_BE498566LD10P001B06B121R1_034.ab1   341 
  530    UCD003F_C05_BE498566LD10P001B06B121F1_034.ab1   456 
  534  C UCD003R_C05_BE498566LD10P001B06B121R1_034.ab1   305 
  634    UCD003F_C05_BE498566LD10P001B06B121F1_034.ab1   560 
  638  C UCD003R_C05_BE498566LD10P001B06B121R1_034.ab1   201 
  730    UCD003F_C05_BE498566LD10P001B06B121F1_034.ab1   656 
  734  C UCD003R_C05_BE498566LD10P001B06B121R1_034.ab1   105 
  814    UCD003F_C05_BE498566LD10P001B06B121F1_034.ab1   740 
Contig length: old 918, new 919

Contig length: old 919, new 919
New start: 0 
S Change at: 843; seg lengths: entry 1, contig 1