No. words: 1665; after pruning: 1639


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.3 (1,1:743)  717  0.00 0.00 0.13  UCD003F_D05_BE498566LD11P001B06B121F1_042.ab1        1   744 (97)  C UCD003R_D05_BE498566LD11P001B06B121R1_042.ab1   (81)   743     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  370 nodes

 187 str. conn. components

Path
    1  C UCD003R_D05_BE498566LD11P001B06B121R1_042.ab1   824 
   97    UCD003F_D05_BE498566LD11P001B06B121F1_042.ab1    16 
  341  C UCD003R_D05_BE498566LD11P001B06B121R1_042.ab1   484 
  353    UCD003F_D05_BE498566LD11P001B06B121F1_042.ab1   272 
  357  C UCD003R_D05_BE498566LD11P001B06B121R1_042.ab1   468 
  361    UCD003F_D05_BE498566LD11P001B06B121F1_042.ab1   280 
  373  C UCD003R_D05_BE498566LD11P001B06B121R1_042.ab1   452 
  377    UCD003F_D05_BE498566LD11P001B06B121F1_042.ab1   296 
  397  C UCD003R_D05_BE498566LD11P001B06B121R1_042.ab1   428 
  405    UCD003F_D05_BE498566LD11P001B06B121F1_042.ab1   324 
  413  C UCD003R_D05_BE498566LD11P001B06B121R1_042.ab1   412 
  433    UCD003F_D05_BE498566LD11P001B06B121F1_042.ab1   352 
  437  C UCD003R_D05_BE498566LD11P001B06B121R1_042.ab1   388 
  445    UCD003F_D05_BE498566LD11P001B06B121F1_042.ab1   364 
  449  C UCD003R_D05_BE498566LD11P001B06B121R1_042.ab1   376 
  541    UCD003F_D05_BE498566LD11P001B06B121F1_042.ab1   460 
  545  C UCD003R_D05_BE498566LD11P001B06B121R1_042.ab1   280 
  625    UCD003F_D05_BE498566LD11P001B06B121F1_042.ab1   544 
  633  C UCD003R_D05_BE498566LD11P001B06B121R1_042.ab1   192 
  641    UCD003F_D05_BE498566LD11P001B06B121F1_042.ab1   560 
  649  C UCD003R_D05_BE498566LD11P001B06B121R1_042.ab1   176 
  805    UCD003F_D05_BE498566LD11P001B06B121F1_042.ab1   724 
Contig length: old 921, new 922

Contig length: old 922, new 922
New start: 0