No. words: 1678; after pruning: 1652


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.1 (1,1:763)  725  0.00 0.13 0.39  UCD003F_E05_BE498566LD12P001B06B121F1_035.ab1        1   766 (76)  C UCD003R_E05_BE498566LD12P001B06B121R1_035.ab1   (72)   764     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  374 nodes

 189 str. conn. components

Path
    1  C UCD003R_E05_BE498566LD12P001B06B121R1_035.ab1   836 
   97    UCD003F_E05_BE498566LD12P001B06B121F1_035.ab1    24 
  381  C UCD003R_E05_BE498566LD12P001B06B121R1_035.ab1   456 
  385    UCD003F_E05_BE498566LD12P001B06B121F1_035.ab1   312 
  421  C UCD003R_E05_BE498566LD12P001B06B121R1_035.ab1   416 
  429    UCD003F_E05_BE498566LD12P001B06B121F1_035.ab1   356 
  433  C UCD003R_E05_BE498566LD12P001B06B121R1_035.ab1   404 
  437    UCD003F_E05_BE498566LD12P001B06B121F1_035.ab1   364 
  441  C UCD003R_E05_BE498566LD12P001B06B121R1_035.ab1   396 
  445    UCD003F_E05_BE498566LD12P001B06B121F1_035.ab1   372 
  461  C UCD003R_E05_BE498566LD12P001B06B121R1_035.ab1   376 
  473    UCD003F_E05_BE498566LD12P001B06B121F1_035.ab1   400 
  481  C UCD003R_E05_BE498566LD12P001B06B121R1_035.ab1   356 
  493    UCD003F_E05_BE498566LD12P001B06B121F1_035.ab1   420 
  505  C UCD003R_E05_BE498566LD12P001B06B121R1_035.ab1   332 
  545    UCD003F_E05_BE498566LD12P001B06B121F1_035.ab1   472 
  549  C UCD003R_E05_BE498566LD12P001B06B121R1_035.ab1   288 
  569    UCD003F_E05_BE498566LD12P001B06B121F1_035.ab1   496 
  573  C UCD003R_E05_BE498566LD12P001B06B121R1_035.ab1   264 
  629    UCD003F_E05_BE498566LD12P001B06B121F1_035.ab1   556 
  637  C UCD003R_E05_BE498566LD12P001B06B121R1_035.ab1   200 
  653    UCD003F_E05_BE498566LD12P001B06B121F1_035.ab1   580 
  661  C UCD003R_E05_BE498566LD12P001B06B121R1_035.ab1   176 
  793    UCD003F_E05_BE498566LD12P001B06B121F1_035.ab1   720 
  806  C UCD003R_E05_BE498566LD12P001B06B121R1_035.ab1    32 
  810    UCD003F_E05_BE498566LD12P001B06B121F1_035.ab1   737 
Contig length: old 914, new 915

Contig length: old 915, new 915
New start: 0