No. words: 1542; after pruning: 1516


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.2 (1,1:766)  736  0.00 0.13 0.13  UCD003F_F05_BE498566LD13P001B06B121F1_043.ab1        1   767 (0)  C UCD003R_F05_BE498566LD13P001B06B121R1_043.ab1   (8)   767     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  378 nodes

 191 str. conn. components

Path
    1  C UCD003R_F05_BE498566LD13P001B06B121R1_043.ab1   775 
   29    UCD003F_F05_BE498566LD13P001B06B121F1_043.ab1    20 
   33  C UCD003R_F05_BE498566LD13P001B06B121R1_043.ab1   743 
   41    UCD003F_F05_BE498566LD13P001B06B121F1_043.ab1    32 
  185  C UCD003R_F05_BE498566LD13P001B06B121R1_043.ab1   591 
  189    UCD003F_F05_BE498566LD13P001B06B121F1_043.ab1   180 
  193  C UCD003R_F05_BE498566LD13P001B06B121R1_043.ab1   583 
  197    UCD003F_F05_BE498566LD13P001B06B121F1_043.ab1   188 
  209  C UCD003R_F05_BE498566LD13P001B06B121R1_043.ab1   567 
  233    UCD003F_F05_BE498566LD13P001B06B121F1_043.ab1   224 
  237  C UCD003R_F05_BE498566LD13P001B06B121R1_043.ab1   539 
  253    UCD003F_F05_BE498566LD13P001B06B121F1_043.ab1   244 
  257  C UCD003R_F05_BE498566LD13P001B06B121R1_043.ab1   519 
  261    UCD003F_F05_BE498566LD13P001B06B121F1_043.ab1   252 
  277  C UCD003R_F05_BE498566LD13P001B06B121R1_043.ab1   499 
  281    UCD003F_F05_BE498566LD13P001B06B121F1_043.ab1   272 
  289  C UCD003R_F05_BE498566LD13P001B06B121R1_043.ab1   487 
  293    UCD003F_F05_BE498566LD13P001B06B121F1_043.ab1   284 
  333  C UCD003R_F05_BE498566LD13P001B06B121R1_043.ab1   443 
  349    UCD003F_F05_BE498566LD13P001B06B121F1_043.ab1   340 
  353  C UCD003R_F05_BE498566LD13P001B06B121R1_043.ab1   423 
  365    UCD003F_F05_BE498566LD13P001B06B121F1_043.ab1   356 
  373  C UCD003R_F05_BE498566LD13P001B06B121R1_043.ab1   403 
  381    UCD003F_F05_BE498566LD13P001B06B121F1_043.ab1   372 
  401  C UCD003R_F05_BE498566LD13P001B06B121R1_043.ab1   375 
  409    UCD003F_F05_BE498566LD13P001B06B121F1_043.ab1   400 
  417  C UCD003R_F05_BE498566LD13P001B06B121R1_043.ab1   359 
  421    UCD003F_F05_BE498566LD13P001B06B121F1_043.ab1   412 
  441  C UCD003R_F05_BE498566LD13P001B06B121R1_043.ab1   335 
  465    UCD003F_F05_BE498566LD13P001B06B121F1_043.ab1   456 
  469  C UCD003R_F05_BE498566LD13P001B06B121R1_043.ab1   307 
  505    UCD003F_F05_BE498566LD13P001B06B121F1_043.ab1   496 
  509  C UCD003R_F05_BE498566LD13P001B06B121R1_043.ab1   267 
  513    UCD003F_F05_BE498566LD13P001B06B121F1_043.ab1   504 
  517  C UCD003R_F05_BE498566LD13P001B06B121R1_043.ab1   259 
  577    UCD003F_F05_BE498566LD13P001B06B121F1_043.ab1   568 
  585  C UCD003R_F05_BE498566LD13P001B06B121R1_043.ab1   191 
  733    UCD003F_F05_BE498566LD13P001B06B121F1_043.ab1   724 
  737  C UCD003R_F05_BE498566LD13P001B06B121R1_043.ab1    39 
  749    UCD003F_F05_BE498566LD13P001B06B121F1_043.ab1   740 
  771  C UCD003R_F05_BE498566LD13P001B06B121R1_043.ab1     6 
Contig length: old 775, new 776

Contig length: old 776, new 776
New start: 0