No. words: 1449; after pruning: 1423


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.8 (1,1:680)  653  0.00 0.00 0.15  UCD009F_A04_BE498566Sn25P001B06P021B101F1_032.ab1        1   681 (42)  C UCD009R_A04_BE498566Sn25P001B06P021B101R1_032.ab1   (46)   680     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C UCD009R_A04_BE498566Sn25P001B06P021B101R1_032.ab1   726 
   54    UCD009F_A04_BE498566Sn25P001B06P021B101F1_032.ab1     8 
  146  C UCD009R_A04_BE498566Sn25P001B06P021B101R1_032.ab1   581 
  154    UCD009F_A04_BE498566Sn25P001B06P021B101F1_032.ab1   108 
  174  C UCD009R_A04_BE498566Sn25P001B06P021B101R1_032.ab1   553 
  178    UCD009F_A04_BE498566Sn25P001B06P021B101F1_032.ab1   132 
  270  C UCD009R_A04_BE498566Sn25P001B06P021B101R1_032.ab1   457 
  274    UCD009F_A04_BE498566Sn25P001B06P021B101F1_032.ab1   228 
  494  C UCD009R_A04_BE498566Sn25P001B06P021B101R1_032.ab1   233 
  498    UCD009F_A04_BE498566Sn25P001B06P021B101F1_032.ab1   452 
  502  C UCD009R_A04_BE498566Sn25P001B06P021B101R1_032.ab1   225 
  506    UCD009F_A04_BE498566Sn25P001B06P021B101F1_032.ab1   460 
  622  C UCD009R_A04_BE498566Sn25P001B06P021B101R1_032.ab1   105 
  630    UCD009F_A04_BE498566Sn25P001B06P021B101F1_032.ab1   584 
  654  C UCD009R_A04_BE498566Sn25P001B06P021B101R1_032.ab1    73 
  662    UCD009F_A04_BE498566Sn25P001B06P021B101F1_032.ab1   616 
  678  C UCD009R_A04_BE498566Sn25P001B06P021B101R1_032.ab1    49 
  682    UCD009F_A04_BE498566Sn25P001B06P021B101F1_032.ab1   636 
Contig length: old 768, new 769

Contig length: old 769, new 769
New start: 0