No. words: 1418; after pruning: 1392


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.3 (1,1:648)  624  0.00 0.00 0.15  UCD009F_B04_BE498566Sn30P001B06P021B101F1_030.ab1        1   649 (60)  C UCD009R_B04_BE498566Sn30P001B06P021B101R1_030.ab1   (61)   648     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1  C UCD009R_B04_BE498566Sn30P001B06P021B101R1_030.ab1   709 
   65    UCD009F_B04_BE498566Sn30P001B06P021B101F1_030.ab1     4 
   81  C UCD009R_B04_BE498566Sn30P001B06P021B101R1_030.ab1   629 
   89    UCD009F_B04_BE498566Sn30P001B06P021B101F1_030.ab1    28 
  101  C UCD009R_B04_BE498566Sn30P001B06P021B101R1_030.ab1   609 
  105    UCD009F_B04_BE498566Sn30P001B06P021B101F1_030.ab1    44 
  125  C UCD009R_B04_BE498566Sn30P001B06P021B101R1_030.ab1   585 
  129    UCD009F_B04_BE498566Sn30P001B06P021B101F1_030.ab1    68 
  133  C UCD009R_B04_BE498566Sn30P001B06P021B101R1_030.ab1   577 
  137    UCD009F_B04_BE498566Sn30P001B06P021B101F1_030.ab1    76 
  141  C UCD009R_B04_BE498566Sn30P001B06P021B101R1_030.ab1   569 
  145    UCD009F_B04_BE498566Sn30P001B06P021B101F1_030.ab1    84 
  149  C UCD009R_B04_BE498566Sn30P001B06P021B101R1_030.ab1   561 
  153    UCD009F_B04_BE498566Sn30P001B06P021B101F1_030.ab1    92 
  173  C UCD009R_B04_BE498566Sn30P001B06P021B101R1_030.ab1   537 
  193    UCD009F_B04_BE498566Sn30P001B06P021B101F1_030.ab1   132 
  197  C UCD009R_B04_BE498566Sn30P001B06P021B101R1_030.ab1   513 
  201    UCD009F_B04_BE498566Sn30P001B06P021B101F1_030.ab1   140 
  205  C UCD009R_B04_BE498566Sn30P001B06P021B101R1_030.ab1   505 
  209    UCD009F_B04_BE498566Sn30P001B06P021B101F1_030.ab1   148 
  257  C UCD009R_B04_BE498566Sn30P001B06P021B101R1_030.ab1   453 
  261    UCD009F_B04_BE498566Sn30P001B06P021B101F1_030.ab1   200 
  341  C UCD009R_B04_BE498566Sn30P001B06P021B101R1_030.ab1   369 
  349    UCD009F_B04_BE498566Sn30P001B06P021B101F1_030.ab1   288 
  405  C UCD009R_B04_BE498566Sn30P001B06P021B101R1_030.ab1   305 
  409    UCD009F_B04_BE498566Sn30P001B06P021B101F1_030.ab1   348 
  653  C UCD009R_B04_BE498566Sn30P001B06P021B101R1_030.ab1    57 
  657    UCD009F_B04_BE498566Sn30P001B06P021B101F1_030.ab1   596 
Contig length: old 769, new 770

Contig length: old 770, new 770
New start: 0