No. words: 1419; after pruning: 1393


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.5 (1,1:652)  632  0.00 0.00 0.00  UCD009F_C04_BE498566Sn31P001B06P021B101F1_028.ab1        1   653 (60)  C UCD009R_C04_BE498566Sn31P001B06P021B101R1_028.ab1   (53)   653     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  328 nodes

 166 str. conn. components

Path
    1  C UCD009R_C04_BE498566Sn31P001B06P021B101R1_028.ab1   706 
   57    UCD009F_C04_BE498566Sn31P001B06P021B101F1_028.ab1     4 
   77  C UCD009R_C04_BE498566Sn31P001B06P021B101R1_028.ab1   630 
   85    UCD009F_C04_BE498566Sn31P001B06P021B101F1_028.ab1    32 
   97  C UCD009R_C04_BE498566Sn31P001B06P021B101R1_028.ab1   610 
  101    UCD009F_C04_BE498566Sn31P001B06P021B101F1_028.ab1    48 
  121  C UCD009R_C04_BE498566Sn31P001B06P021B101R1_028.ab1   586 
  125    UCD009F_C04_BE498566Sn31P001B06P021B101F1_028.ab1    72 
  145  C UCD009R_C04_BE498566Sn31P001B06P021B101R1_028.ab1   562 
  149    UCD009F_C04_BE498566Sn31P001B06P021B101F1_028.ab1    96 
  249  C UCD009R_C04_BE498566Sn31P001B06P021B101R1_028.ab1   458 
  257    UCD009F_C04_BE498566Sn31P001B06P021B101F1_028.ab1   204 
  485  C UCD009R_C04_BE498566Sn31P001B06P021B101R1_028.ab1   222 
  489    UCD009F_C04_BE498566Sn31P001B06P021B101F1_028.ab1   436 
  501  C UCD009R_C04_BE498566Sn31P001B06P021B101R1_028.ab1   206 
  505    UCD009F_C04_BE498566Sn31P001B06P021B101F1_028.ab1   452 
  609  C UCD009R_C04_BE498566Sn31P001B06P021B101R1_028.ab1    98 
  613    UCD009F_C04_BE498566Sn31P001B06P021B101F1_028.ab1   560 
  621  C UCD009R_C04_BE498566Sn31P001B06P021B101R1_028.ab1    86 
  625    UCD009F_C04_BE498566Sn31P001B06P021B101F1_028.ab1   572 
  649  C UCD009R_C04_BE498566Sn31P001B06P021B101R1_028.ab1    58 
  661    UCD009F_C04_BE498566Sn31P001B06P021B101F1_028.ab1   608 
Contig length: old 766, new 766

Contig length: old 766, new 766
New start: 0