No. words: 1419; after pruning: 1393


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.5 (1,1:653)  633  0.00 0.00 0.00  UCD009F_D04_BE498566Sn32P001B06P021B101F1_026.ab1        1   654 (60)  C UCD009R_D04_BE498566Sn32P001B06P021B101R1_026.ab1   (51)   654     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  328 nodes

 166 str. conn. components

Path
    1  C UCD009R_D04_BE498566Sn32P001B06P021B101R1_026.ab1   705 
   55    UCD009F_D04_BE498566Sn32P001B06P021B101F1_026.ab1     4 
   75  C UCD009R_D04_BE498566Sn32P001B06P021B101R1_026.ab1   631 
   83    UCD009F_D04_BE498566Sn32P001B06P021B101F1_026.ab1    32 
  143  C UCD009R_D04_BE498566Sn32P001B06P021B101R1_026.ab1   563 
  147    UCD009F_D04_BE498566Sn32P001B06P021B101F1_026.ab1    96 
  183  C UCD009R_D04_BE498566Sn32P001B06P021B101R1_026.ab1   523 
  187    UCD009F_D04_BE498566Sn32P001B06P021B101F1_026.ab1   136 
  199  C UCD009R_D04_BE498566Sn32P001B06P021B101R1_026.ab1   507 
  203    UCD009F_D04_BE498566Sn32P001B06P021B101F1_026.ab1   152 
  239  C UCD009R_D04_BE498566Sn32P001B06P021B101R1_026.ab1   467 
  247    UCD009F_D04_BE498566Sn32P001B06P021B101F1_026.ab1   196 
  419  C UCD009R_D04_BE498566Sn32P001B06P021B101R1_026.ab1   287 
  423    UCD009F_D04_BE498566Sn32P001B06P021B101F1_026.ab1   372 
  431  C UCD009R_D04_BE498566Sn32P001B06P021B101R1_026.ab1   275 
  435    UCD009F_D04_BE498566Sn32P001B06P021B101F1_026.ab1   384 
  619  C UCD009R_D04_BE498566Sn32P001B06P021B101R1_026.ab1    87 
  623    UCD009F_D04_BE498566Sn32P001B06P021B101F1_026.ab1   572 
  635  C UCD009R_D04_BE498566Sn32P001B06P021B101R1_026.ab1    71 
  639    UCD009F_D04_BE498566Sn32P001B06P021B101F1_026.ab1   588 
  651  C UCD009R_D04_BE498566Sn32P001B06P021B101R1_026.ab1    55 
  655    UCD009F_D04_BE498566Sn32P001B06P021B101F1_026.ab1   604 
Contig length: old 765, new 765

Contig length: old 765, new 765
New start: 0