No. words: 1424; after pruning: 1398


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 14.4 (1,1:696)  672  0.00 0.00 0.00  UCD003F_D03_BE498566TU01P001B06B121F1_026.ab1        1   694 (21)  C UCD003R_D03_BE498566TU01P001B06B121R1_026.ab1   (12)   697     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  348 nodes

 176 str. conn. components

Path
    1  C UCD003R_D03_BE498566TU01P001B06B121R1_026.ab1   709 
   24    UCD003F_D03_BE498566TU01P001B06B121F1_026.ab1    12 
   28  C UCD003R_D03_BE498566TU01P001B06B121R1_026.ab1   682 
   32    UCD003F_D03_BE498566TU01P001B06B121F1_026.ab1    20 
  144  C UCD003R_D03_BE498566TU01P001B06B121R1_026.ab1   566 
  148    UCD003F_D03_BE498566TU01P001B06B121F1_026.ab1   136 
  152  C UCD003R_D03_BE498566TU01P001B06B121R1_026.ab1   558 
  156    UCD003F_D03_BE498566TU01P001B06B121F1_026.ab1   144 
  176  C UCD003R_D03_BE498566TU01P001B06B121R1_026.ab1   534 
  180    UCD003F_D03_BE498566TU01P001B06B121F1_026.ab1   168 
  232  C UCD003R_D03_BE498566TU01P001B06B121R1_026.ab1   478 
  236    UCD003F_D03_BE498566TU01P001B06B121F1_026.ab1   224 
  280  C UCD003R_D03_BE498566TU01P001B06B121R1_026.ab1   430 
  292    UCD003F_D03_BE498566TU01P001B06B121F1_026.ab1   280 
  300  C UCD003R_D03_BE498566TU01P001B06B121R1_026.ab1   410 
  304    UCD003F_D03_BE498566TU01P001B06B121F1_026.ab1   292 
  320  C UCD003R_D03_BE498566TU01P001B06B121R1_026.ab1   390 
  324    UCD003F_D03_BE498566TU01P001B06B121F1_026.ab1   312 
  332  C UCD003R_D03_BE498566TU01P001B06B121R1_026.ab1   378 
  340    UCD003F_D03_BE498566TU01P001B06B121F1_026.ab1   328 
  344  C UCD003R_D03_BE498566TU01P001B06B121R1_026.ab1   366 
  352    UCD003F_D03_BE498566TU01P001B06B121F1_026.ab1   340 
  356  C UCD003R_D03_BE498566TU01P001B06B121R1_026.ab1   354 
  360    UCD003F_D03_BE498566TU01P001B06B121F1_026.ab1   348 
  368  C UCD003R_D03_BE498566TU01P001B06B121R1_026.ab1   342 
  404    UCD003F_D03_BE498566TU01P001B06B121F1_026.ab1   392 
  412  C UCD003R_D03_BE498566TU01P001B06B121R1_026.ab1   298 
  608    UCD003F_D03_BE498566TU01P001B06B121F1_026.ab1   596 
  612  C UCD003R_D03_BE498566TU01P001B06B121R1_026.ab1    98 
  672    UCD003F_D03_BE498566TU01P001B06B121F1_026.ab1   660 
  676  C UCD003R_D03_BE498566TU01P001B06B121R1_026.ab1    34 
  692    UCD003F_D03_BE498566TU01P001B06B121F1_026.ab1   680 
Contig length: old 727, new 727

Contig length: old 727, new 727
New start: 0