No. words: 1434; after pruning: 1408


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.1 (1,1:680)  658  0.00 0.00 0.00  UCD009F_C02_BE498566Ta11P001B06P021B101F1_012.ab1        1   681 (30)  C UCD009R_C02_BE498566Ta11P001B06P021B101R1_012.ab1   (42)   681     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  342 nodes

 173 str. conn. components

Path
    1  C UCD009R_C02_BE498566Ta11P001B06P021B101R1_012.ab1   723 
   58    UCD009F_C02_BE498566Ta11P001B06P021B101F1_012.ab1    16 
  142  C UCD009R_C02_BE498566Ta11P001B06P021B101R1_012.ab1   582 
  146    UCD009F_C02_BE498566Ta11P001B06P021B101F1_012.ab1   104 
  242  C UCD009R_C02_BE498566Ta11P001B06P021B101R1_012.ab1   482 
  246    UCD009F_C02_BE498566Ta11P001B06P021B101F1_012.ab1   204 
  250  C UCD009R_C02_BE498566Ta11P001B06P021B101R1_012.ab1   474 
  258    UCD009F_C02_BE498566Ta11P001B06P021B101F1_012.ab1   216 
  458  C UCD009R_C02_BE498566Ta11P001B06P021B101R1_012.ab1   266 
  462    UCD009F_C02_BE498566Ta11P001B06P021B101F1_012.ab1   420 
  478  C UCD009R_C02_BE498566Ta11P001B06P021B101R1_012.ab1   246 
  494    UCD009F_C02_BE498566Ta11P001B06P021B101F1_012.ab1   452 
  498  C UCD009R_C02_BE498566Ta11P001B06P021B101R1_012.ab1   226 
  502    UCD009F_C02_BE498566Ta11P001B06P021B101F1_012.ab1   460 
  542  C UCD009R_C02_BE498566Ta11P001B06P021B101R1_012.ab1   182 
  550    UCD009F_C02_BE498566Ta11P001B06P021B101F1_012.ab1   508 
  554  C UCD009R_C02_BE498566Ta11P001B06P021B101R1_012.ab1   170 
  578    UCD009F_C02_BE498566Ta11P001B06P021B101F1_012.ab1   536 
  598  C UCD009R_C02_BE498566Ta11P001B06P021B101R1_012.ab1   126 
  630    UCD009F_C02_BE498566Ta11P001B06P021B101F1_012.ab1   588 
  634  C UCD009R_C02_BE498566Ta11P001B06P021B101R1_012.ab1    90 
  658    UCD009F_C02_BE498566Ta11P001B06P021B101F1_012.ab1   616 
  666  C UCD009R_C02_BE498566Ta11P001B06P021B101R1_012.ab1    58 
  670    UCD009F_C02_BE498566Ta11P001B06P021B101F1_012.ab1   628 
  674  C UCD009R_C02_BE498566Ta11P001B06P021B101R1_012.ab1    50 
  678    UCD009F_C02_BE498566Ta11P001B06P021B101F1_012.ab1   636 
  682  C UCD009R_C02_BE498566Ta11P001B06P021B101R1_012.ab1    42 
  698    UCD009F_C02_BE498566Ta11P001B06P021B101F1_012.ab1   656 
Contig length: old 753, new 753

Contig length: old 753, new 753
New start: 0