No. words: 1426; after pruning: 1400


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.7 (1,1:660)  639  0.00 0.00 0.00  UCD009F_F02_BE498566Ta14P001B06P021B101F1_006.ab1        1   661 (61)  C UCD009R_F02_BE498566Ta14P001B06P021B101R1_006.ab1   (43)   661     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  332 nodes

 168 str. conn. components

Path
    1  C UCD009R_F02_BE498566Ta14P001B06P021B101R1_006.ab1   704 
   55    UCD009F_F02_BE498566Ta14P001B06P021B101F1_006.ab1    12 
  251  C UCD009R_F02_BE498566Ta14P001B06P021B101R1_006.ab1   454 
  255    UCD009F_F02_BE498566Ta14P001B06P021B101F1_006.ab1   212 
  431  C UCD009R_F02_BE498566Ta14P001B06P021B101R1_006.ab1   274 
  435    UCD009F_F02_BE498566Ta14P001B06P021B101F1_006.ab1   392 
  599  C UCD009R_F02_BE498566Ta14P001B06P021B101R1_006.ab1   106 
  603    UCD009F_F02_BE498566Ta14P001B06P021B101F1_006.ab1   560 
  619  C UCD009R_F02_BE498566Ta14P001B06P021B101R1_006.ab1    86 
  627    UCD009F_F02_BE498566Ta14P001B06P021B101F1_006.ab1   584 
  647  C UCD009R_F02_BE498566Ta14P001B06P021B101R1_006.ab1    58 
  655    UCD009F_F02_BE498566Ta14P001B06P021B101F1_006.ab1   612 
Contig length: old 765, new 765

Contig length: old 765, new 765
New start: 0