No. words: 1442; after pruning: 1416


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.9 (1,1:676)  652  0.15 0.00 0.00  UCD009F_G02_BE498566Ta15P001B06P021B101F1_004.ab1        1   677 (44)  C UCD009R_G02_BE498566Ta15P001B06P021B101R1_004.ab1   (44)   677     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  336 nodes

 170 str. conn. components

Path
    1  C UCD009R_G02_BE498566Ta15P001B06P021B101R1_004.ab1   721 
   56    UCD009F_G02_BE498566Ta15P001B06P021B101F1_004.ab1    12 
  144  C UCD009R_G02_BE498566Ta15P001B06P021B101R1_004.ab1   578 
  148    UCD009F_G02_BE498566Ta15P001B06P021B101F1_004.ab1   104 
  252  C UCD009R_G02_BE498566Ta15P001B06P021B101R1_004.ab1   470 
  256    UCD009F_G02_BE498566Ta15P001B06P021B101F1_004.ab1   212 
  492  C UCD009R_G02_BE498566Ta15P001B06P021B101R1_004.ab1   230 
  496    UCD009F_G02_BE498566Ta15P001B06P021B101F1_004.ab1   452 
  620  C UCD009R_G02_BE498566Ta15P001B06P021B101R1_004.ab1   102 
  628    UCD009F_G02_BE498566Ta15P001B06P021B101F1_004.ab1   584 
  652  C UCD009R_G02_BE498566Ta15P001B06P021B101R1_004.ab1    70 
  660    UCD009F_G02_BE498566Ta15P001B06P021B101F1_004.ab1   616 
  676  C UCD009R_G02_BE498566Ta15P001B06P021B101R1_004.ab1    46 
  680    UCD009F_G02_BE498566Ta15P001B06P021B101F1_004.ab1   636 
  684  C UCD009R_G02_BE498566Ta15P001B06P021B101R1_004.ab1    38 
  688    UCD009F_G02_BE498566Ta15P001B06P021B101F1_004.ab1   644 
Contig length: old 765, new 765

Contig length: old 765, new 765
New start: 0