No. words: 1438; after pruning: 1412


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.6 (1,1:660)  635  0.00 0.15 0.00  UCD009F_H02_BE498566Ta16P001B06P021B101F1_002.ab1        1   661 (69)  C UCD009R_H02_BE498566Ta16P001B06P021B101R1_002.ab1   (46)   662     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  330 nodes

 167 str. conn. components

Path
    1  C UCD009R_H02_BE498566Ta16P001B06P021B101R1_002.ab1   708 
   58    UCD009F_H02_BE498566Ta16P001B06P021B101F1_002.ab1    12 
   70  C UCD009R_H02_BE498566Ta16P001B06P021B101R1_002.ab1   639 
   74    UCD009F_H02_BE498566Ta16P001B06P021B101F1_002.ab1    28 
   78  C UCD009R_H02_BE498566Ta16P001B06P021B101R1_002.ab1   631 
   87    UCD009F_H02_BE498566Ta16P001B06P021B101F1_002.ab1    40 
Contig length: old 777, new 777

Contig length: old 777, new 777
New start: 0