No. words: 1449; after pruning: 1423


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 14.6 (1,1:682)  650  0.00 0.00 0.29  UCD009F_A03_BE498566Ta17P001B06P021B101F1_031.ab1        1   681 (39)  C UCD009R_A03_BE498566Ta17P001B06P021B101R1_031.ab1   (47)   682     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  336 nodes

 170 str. conn. components

Path
    1  C UCD009R_A03_BE498566Ta17P001B06P021B101R1_031.ab1   729 
   63    UCD009F_A03_BE498566Ta17P001B06P021B101F1_031.ab1    16 
   83  C UCD009R_A03_BE498566Ta17P001B06P021B101R1_031.ab1   647 
   87    UCD009F_A03_BE498566Ta17P001B06P021B101F1_031.ab1    40 
   99  C UCD009R_A03_BE498566Ta17P001B06P021B101R1_031.ab1   631 
  103    UCD009F_A03_BE498566Ta17P001B06P021B101F1_031.ab1    56 
  123  C UCD009R_A03_BE498566Ta17P001B06P021B101R1_031.ab1   607 
  127    UCD009F_A03_BE498566Ta17P001B06P021B101F1_031.ab1    80 
  147  C UCD009R_A03_BE498566Ta17P001B06P021B101R1_031.ab1   583 
  151    UCD009F_A03_BE498566Ta17P001B06P021B101F1_031.ab1   104 
  187  C UCD009R_A03_BE498566Ta17P001B06P021B101R1_031.ab1   543 
  191    UCD009F_A03_BE498566Ta17P001B06P021B101F1_031.ab1   144 
  215  C UCD009R_A03_BE498566Ta17P001B06P021B101R1_031.ab1   515 
  219    UCD009F_A03_BE498566Ta17P001B06P021B101F1_031.ab1   172 
  255  C UCD009R_A03_BE498566Ta17P001B06P021B101R1_031.ab1   475 
  263    UCD009F_A03_BE498566Ta17P001B06P021B101F1_031.ab1   216 
  435  C UCD009R_A03_BE498566Ta17P001B06P021B101R1_031.ab1   295 
  439    UCD009F_A03_BE498566Ta17P001B06P021B101F1_031.ab1   392 
  487  C UCD009R_A03_BE498566Ta17P001B06P021B101R1_031.ab1   243 
  491    UCD009F_A03_BE498566Ta17P001B06P021B101F1_031.ab1   444 
  503  C UCD009R_A03_BE498566Ta17P001B06P021B101R1_031.ab1   227 
  507    UCD009F_A03_BE498566Ta17P001B06P021B101F1_031.ab1   460 
  623  C UCD009R_A03_BE498566Ta17P001B06P021B101R1_031.ab1   107 
  631    UCD009F_A03_BE498566Ta17P001B06P021B101F1_031.ab1   584 
  651  C UCD009R_A03_BE498566Ta17P001B06P021B101R1_031.ab1    79 
  659    UCD009F_A03_BE498566Ta17P001B06P021B101F1_031.ab1   612 
Contig length: old 766, new 767

Contig length: old 767, new 767
New start: 0