No. words: 1443; after pruning: 1417


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.0 (1,1:680)  654  0.00 0.00 0.15  UCD009F_B03_BE498566Ta18P001B06P021B101F1_029.ab1        1   681 (39)  C UCD009R_B03_BE498566Ta18P001B06P021B101R1_029.ab1   (43)   680     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C UCD009R_B03_BE498566Ta18P001B06P021B101R1_029.ab1   723 
   59    UCD009F_B03_BE498566Ta18P001B06P021B101F1_029.ab1    16 
   95  C UCD009R_B03_BE498566Ta18P001B06P021B101R1_029.ab1   629 
   99    UCD009F_B03_BE498566Ta18P001B06P021B101F1_029.ab1    56 
  107  C UCD009R_B03_BE498566Ta18P001B06P021B101R1_029.ab1   617 
  111    UCD009F_B03_BE498566Ta18P001B06P021B101F1_029.ab1    68 
  143  C UCD009R_B03_BE498566Ta18P001B06P021B101R1_029.ab1   581 
  151    UCD009F_B03_BE498566Ta18P001B06P021B101F1_029.ab1   108 
  171  C UCD009R_B03_BE498566Ta18P001B06P021B101R1_029.ab1   553 
  175    UCD009F_B03_BE498566Ta18P001B06P021B101F1_029.ab1   132 
  251  C UCD009R_B03_BE498566Ta18P001B06P021B101R1_029.ab1   473 
  259    UCD009F_B03_BE498566Ta18P001B06P021B101F1_029.ab1   216 
  491  C UCD009R_B03_BE498566Ta18P001B06P021B101R1_029.ab1   233 
  495    UCD009F_B03_BE498566Ta18P001B06P021B101F1_029.ab1   452 
  527  C UCD009R_B03_BE498566Ta18P001B06P021B101R1_029.ab1   197 
  531    UCD009F_B03_BE498566Ta18P001B06P021B101F1_029.ab1   488 
  619  C UCD009R_B03_BE498566Ta18P001B06P021B101R1_029.ab1   105 
  623    UCD009F_B03_BE498566Ta18P001B06P021B101F1_029.ab1   580 
  651  C UCD009R_B03_BE498566Ta18P001B06P021B101R1_029.ab1    73 
  655    UCD009F_B03_BE498566Ta18P001B06P021B101F1_029.ab1   612 
  675  C UCD009R_B03_BE498566Ta18P001B06P021B101R1_029.ab1    49 
  679    UCD009F_B03_BE498566Ta18P001B06P021B101F1_029.ab1   636 
Contig length: old 762, new 763

Contig length: old 763, new 763
New start: 0