No. words: 1444; after pruning: 1418


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.2 (1,1:679)  646  0.15 0.15 0.15  UCD009F_E03_BE498566Ta21P001B06P021B101F1_023.ab1        1   680 (40)  C UCD009R_E03_BE498566Ta21P001B06P021B101R1_023.ab1   (44)   680     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  336 nodes

 170 str. conn. components

Path
    1  C UCD009R_E03_BE498566Ta21P001B06P021B101R1_023.ab1   724 
   52    UCD009F_E03_BE498566Ta21P001B06P021B101F1_023.ab1     8 
   76  C UCD009R_E03_BE498566Ta21P001B06P021B101R1_023.ab1   649 
   87    UCD009F_E03_BE498566Ta21P001B06P021B101F1_023.ab1    42 
  123  C UCD009R_E03_BE498566Ta21P001B06P021B101R1_023.ab1   602 
  127    UCD009F_E03_BE498566Ta21P001B06P021B101F1_023.ab1    82 
  143  C UCD009R_E03_BE498566Ta21P001B06P021B101R1_023.ab1   582 
  151    UCD009F_E03_BE498566Ta21P001B06P021B101F1_023.ab1   106 
  203  C UCD009R_E03_BE498566Ta21P001B06P021B101R1_023.ab1   522 
  207    UCD009F_E03_BE498566Ta21P001B06P021B101F1_023.ab1   162 
  619  C UCD009R_E03_BE498566Ta21P001B06P021B101R1_023.ab1   106 
  627    UCD009F_E03_BE498566Ta21P001B06P021B101F1_023.ab1   582 
  651  C UCD009R_E03_BE498566Ta21P001B06P021B101R1_023.ab1    74 
  655    UCD009F_E03_BE498566Ta21P001B06P021B101F1_023.ab1   610 
Contig length: old 764, new 765

Contig length: old 765, new 765
New start: 0