No. words: 1444; after pruning: 1418


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.0 (1,1:680)  653  0.00 0.00 0.15  UCD009F_G03_BE498566Ta23P001B06P021B101F1_019.ab1        1   681 (39)  C UCD009R_G03_BE498566Ta23P001B06P021B101R1_019.ab1   (44)   680     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C UCD009R_G03_BE498566Ta23P001B06P021B101R1_019.ab1   724 
   60    UCD009F_G03_BE498566Ta23P001B06P021B101F1_019.ab1    16 
   68  C UCD009R_G03_BE498566Ta23P001B06P021B101R1_019.ab1   657 
   72    UCD009F_G03_BE498566Ta23P001B06P021B101F1_019.ab1    28 
  252  C UCD009R_G03_BE498566Ta23P001B06P021B101R1_019.ab1   473 
  256    UCD009F_G03_BE498566Ta23P001B06P021B101F1_019.ab1   212 
  620  C UCD009R_G03_BE498566Ta23P001B06P021B101R1_019.ab1   105 
  624    UCD009F_G03_BE498566Ta23P001B06P021B101F1_019.ab1   580 
  652  C UCD009R_G03_BE498566Ta23P001B06P021B101R1_019.ab1    73 
  660    UCD009F_G03_BE498566Ta23P001B06P021B101F1_019.ab1   616 
  676  C UCD009R_G03_BE498566Ta23P001B06P021B101R1_019.ab1    49 
  680    UCD009F_G03_BE498566Ta23P001B06P021B101F1_019.ab1   636 
Contig length: old 763, new 764

Contig length: old 764, new 764
New start: 0