No. words: 1448; after pruning: 1422


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.9 (1,1:680)  653  0.00 0.00 0.15  UCD009F_A01_BE498566Td01P001B06P021B101F1_015.ab1        1   681 (42)  C UCD009R_A01_BE498566Td01P001B06P021B101R1_015.ab1   (45)   680     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C UCD009R_A01_BE498566Td01P001B06P021B101R1_015.ab1   725 
   61    UCD009F_A01_BE498566Td01P001B06P021B101F1_015.ab1    16 
  145  C UCD009R_A01_BE498566Td01P001B06P021B101R1_015.ab1   581 
  149    UCD009F_A01_BE498566Td01P001B06P021B101F1_015.ab1   104 
  197  C UCD009R_A01_BE498566Td01P001B06P021B101R1_015.ab1   529 
  201    UCD009F_A01_BE498566Td01P001B06P021B101F1_015.ab1   156 
  493  C UCD009R_A01_BE498566Td01P001B06P021B101R1_015.ab1   233 
  497    UCD009F_A01_BE498566Td01P001B06P021B101F1_015.ab1   452 
  501  C UCD009R_A01_BE498566Td01P001B06P021B101R1_015.ab1   225 
  505    UCD009F_A01_BE498566Td01P001B06P021B101F1_015.ab1   460 
  605  C UCD009R_A01_BE498566Td01P001B06P021B101R1_015.ab1   121 
  629    UCD009F_A01_BE498566Td01P001B06P021B101F1_015.ab1   584 
  637  C UCD009R_A01_BE498566Td01P001B06P021B101R1_015.ab1    89 
  645    UCD009F_A01_BE498566Td01P001B06P021B101F1_015.ab1   600 
  649  C UCD009R_A01_BE498566Td01P001B06P021B101R1_015.ab1    77 
  657    UCD009F_A01_BE498566Td01P001B06P021B101F1_015.ab1   612 
  677  C UCD009R_A01_BE498566Td01P001B06P021B101R1_015.ab1    49 
  681    UCD009F_A01_BE498566Td01P001B06P021B101F1_015.ab1   636 
Contig length: old 767, new 768

Contig length: old 768, new 768
New start: 0