No. words: 1447; after pruning: 1421


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.8 (1,1:679)  648  0.00 0.15 0.15  UCD009F_B01_BE498566Td02P001B06P021B101F1_013.ab1        1   680 (42)  C UCD009R_B01_BE498566Td02P001B06P021B101R1_013.ab1   (45)   680     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  336 nodes

 170 str. conn. components

Path
    1  C UCD009R_B01_BE498566Td02P001B06P021B101R1_013.ab1   725 
   57    UCD009F_B01_BE498566Td02P001B06P021B101F1_013.ab1    12 
   77  C UCD009R_B01_BE498566Td02P001B06P021B101R1_013.ab1   649 
   87    UCD009F_B01_BE498566Td02P001B06P021B101F1_013.ab1    41 
  123  C UCD009R_B01_BE498566Td02P001B06P021B101R1_013.ab1   603 
  127    UCD009F_B01_BE498566Td02P001B06P021B101F1_013.ab1    81 
  147  C UCD009R_B01_BE498566Td02P001B06P021B101R1_013.ab1   579 
  151    UCD009F_B01_BE498566Td02P001B06P021B101F1_013.ab1   105 
  187  C UCD009R_B01_BE498566Td02P001B06P021B101R1_013.ab1   539 
  191    UCD009F_B01_BE498566Td02P001B06P021B101F1_013.ab1   145 
  243  C UCD009R_B01_BE498566Td02P001B06P021B101R1_013.ab1   483 
  247    UCD009F_B01_BE498566Td02P001B06P021B101F1_013.ab1   201 
  251  C UCD009R_B01_BE498566Td02P001B06P021B101R1_013.ab1   475 
  259    UCD009F_B01_BE498566Td02P001B06P021B101F1_013.ab1   213 
  435  C UCD009R_B01_BE498566Td02P001B06P021B101R1_013.ab1   291 
  439    UCD009F_B01_BE498566Td02P001B06P021B101F1_013.ab1   393 
  503  C UCD009R_B01_BE498566Td02P001B06P021B101R1_013.ab1   223 
  507    UCD009F_B01_BE498566Td02P001B06P021B101F1_013.ab1   461 
  611  C UCD009R_B01_BE498566Td02P001B06P021B101R1_013.ab1   115 
  615    UCD009F_B01_BE498566Td02P001B06P021B101F1_013.ab1   569 
  619  C UCD009R_B01_BE498566Td02P001B06P021B101R1_013.ab1   107 
  627    UCD009F_B01_BE498566Td02P001B06P021B101F1_013.ab1   581 
  643  C UCD009R_B01_BE498566Td02P001B06P021B101R1_013.ab1    83 
  663    UCD009F_B01_BE498566Td02P001B06P021B101F1_013.ab1   617 
  667  C UCD009R_B01_BE498566Td02P001B06P021B101R1_013.ab1    59 
  671    UCD009F_B01_BE498566Td02P001B06P021B101F1_013.ab1   625 
Contig length: old 767, new 768

Contig length: old 768, new 768
New start: 0