No. words: 1427; after pruning: 1401


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.7 (1,1:662)  641  0.00 0.00 0.00  UCD009F_C01_BE498566Td03P001B06P021B101F1_011.ab1        1   663 (57)  C UCD009R_C01_BE498566Td03P001B06P021B101R1_011.ab1   (44)   663     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  334 nodes

 169 str. conn. components

Path
    1  C UCD009R_C01_BE498566Td03P001B06P021B101R1_011.ab1   707 
   60    UCD009F_C01_BE498566Td03P001B06P021B101F1_011.ab1    16 
  620  C UCD009R_C01_BE498566Td03P001B06P021B101R1_011.ab1    88 
  628    UCD009F_C01_BE498566Td03P001B06P021B101F1_011.ab1   584 
  636  C UCD009R_C01_BE498566Td03P001B06P021B101R1_011.ab1    72 
  640    UCD009F_C01_BE498566Td03P001B06P021B101F1_011.ab1   596 
  652  C UCD009R_C01_BE498566Td03P001B06P021B101R1_011.ab1    56 
  656    UCD009F_C01_BE498566Td03P001B06P021B101F1_011.ab1   612 
  676  C UCD009R_C01_BE498566Td03P001B06P021B101R1_011.ab1    32 
  680    UCD009F_C01_BE498566Td03P001B06P021B101F1_011.ab1   636 
Contig length: old 764, new 764

Contig length: old 764, new 764
New start: 0