No. words: 1428; after pruning: 1402


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.6 (1,1:662)  638  0.15 0.00 0.00  UCD009F_D01_BE498566Td04P001B06P021B101F1_009.ab1        1   663 (58)  C UCD009R_D01_BE498566Td04P001B06P021B101R1_009.ab1   (44)   663     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  330 nodes

 167 str. conn. components

Path
    1  C UCD009R_D01_BE498566Td04P001B06P021B101R1_009.ab1   707 
   56    UCD009F_D01_BE498566Td04P001B06P021B101F1_009.ab1    12 
  144  C UCD009R_D01_BE498566Td04P001B06P021B101R1_009.ab1   564 
  148    UCD009F_D01_BE498566Td04P001B06P021B101F1_009.ab1   104 
  492  C UCD009R_D01_BE498566Td04P001B06P021B101R1_009.ab1   216 
  496    UCD009F_D01_BE498566Td04P001B06P021B101F1_009.ab1   452 
  500  C UCD009R_D01_BE498566Td04P001B06P021B101R1_009.ab1   208 
  504    UCD009F_D01_BE498566Td04P001B06P021B101F1_009.ab1   460 
  620  C UCD009R_D01_BE498566Td04P001B06P021B101R1_009.ab1    88 
  628    UCD009F_D01_BE498566Td04P001B06P021B101F1_009.ab1   584 
  636  C UCD009R_D01_BE498566Td04P001B06P021B101R1_009.ab1    72 
  640    UCD009F_D01_BE498566Td04P001B06P021B101F1_009.ab1   596 
  648  C UCD009R_D01_BE498566Td04P001B06P021B101R1_009.ab1    60 
  656    UCD009F_D01_BE498566Td04P001B06P021B101F1_009.ab1   612 
Contig length: old 765, new 765

Contig length: old 765, new 765
New start: 0