No. words: 1441; after pruning: 1415


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.8 (1,1:676)  647  0.15 0.00 0.15  UCD009F_E01_BE498566Td05P001B06P021B101F1_007.ab1        1   677 (44)  C UCD009R_E01_BE498566Td05P001B06P021B101R1_007.ab1   (44)   676     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  334 nodes

 169 str. conn. components

Path
    1  C UCD009R_E01_BE498566Td05P001B06P021B101R1_007.ab1   720 
   56    UCD009F_E01_BE498566Td05P001B06P021B101F1_007.ab1    12 
   80  C UCD009R_E01_BE498566Td05P001B06P021B101R1_007.ab1   641 
   84    UCD009F_E01_BE498566Td05P001B06P021B101F1_007.ab1    40 
  252  C UCD009R_E01_BE498566Td05P001B06P021B101R1_007.ab1   469 
  256    UCD009F_E01_BE498566Td05P001B06P021B101F1_007.ab1   212 
  620  C UCD009R_E01_BE498566Td05P001B06P021B101R1_007.ab1   101 
  624    UCD009F_E01_BE498566Td05P001B06P021B101F1_007.ab1   580 
  636  C UCD009R_E01_BE498566Td05P001B06P021B101R1_007.ab1    85 
  640    UCD009F_E01_BE498566Td05P001B06P021B101F1_007.ab1   596 
  652  C UCD009R_E01_BE498566Td05P001B06P021B101R1_007.ab1    69 
  660    UCD009F_E01_BE498566Td05P001B06P021B101F1_007.ab1   616 
  676  C UCD009R_E01_BE498566Td05P001B06P021B101R1_007.ab1    45 
  680    UCD009F_E01_BE498566Td05P001B06P021B101F1_007.ab1   636 
Contig length: old 764, new 765

Contig length: old 765, new 765
New start: 0