No. words: 1443; after pruning: 1417


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.0 (1,1:675)  654  0.00 0.00 0.00  UCD009F_F01_BE498566Td06P001B06P021B101F1_005.ab1        1   676 (46)  C UCD009R_F01_BE498566Td06P001B06P021B101R1_005.ab1   (45)   676     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C UCD009R_F01_BE498566Td06P001B06P021B101R1_005.ab1   721 
   57    UCD009F_F01_BE498566Td06P001B06P021B101F1_005.ab1    12 
  145  C UCD009R_F01_BE498566Td06P001B06P021B101R1_005.ab1   577 
  149    UCD009F_F01_BE498566Td06P001B06P021B101F1_005.ab1   104 
  433  C UCD009R_F01_BE498566Td06P001B06P021B101R1_005.ab1   289 
  437    UCD009F_F01_BE498566Td06P001B06P021B101F1_005.ab1   392 
  601  C UCD009R_F01_BE498566Td06P001B06P021B101R1_005.ab1   121 
  605    UCD009F_F01_BE498566Td06P001B06P021B101F1_005.ab1   560 
  621  C UCD009R_F01_BE498566Td06P001B06P021B101R1_005.ab1   101 
  629    UCD009F_F01_BE498566Td06P001B06P021B101F1_005.ab1   584 
  637  C UCD009R_F01_BE498566Td06P001B06P021B101R1_005.ab1    85 
  641    UCD009F_F01_BE498566Td06P001B06P021B101F1_005.ab1   596 
  649  C UCD009R_F01_BE498566Td06P001B06P021B101R1_005.ab1    73 
  661    UCD009F_F01_BE498566Td06P001B06P021B101F1_005.ab1   616 
  677  C UCD009R_F01_BE498566Td06P001B06P021B101R1_005.ab1    45 
  681    UCD009F_F01_BE498566Td06P001B06P021B101F1_005.ab1   636 
Contig length: old 767, new 767

Contig length: old 767, new 767
New start: 0