No. words: 1427; after pruning: 1401


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.7 (1,1:661)  640  0.00 0.00 0.00  UCD009F_G01_BE498566Td07P001B06P021B101F1_003.ab1        1   662 (61)  C UCD009R_G01_BE498566Td07P001B06P021B101R1_003.ab1   (42)   662     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  332 nodes

 168 str. conn. components

Path
    1  C UCD009R_G01_BE498566Td07P001B06P021B101R1_003.ab1   704 
   54    UCD009F_G01_BE498566Td07P001B06P021B101F1_003.ab1    12 
  142  C UCD009R_G01_BE498566Td07P001B06P021B101R1_003.ab1   563 
  146    UCD009F_G01_BE498566Td07P001B06P021B101F1_003.ab1   104 
  250  C UCD009R_G01_BE498566Td07P001B06P021B101R1_003.ab1   455 
  254    UCD009F_G01_BE498566Td07P001B06P021B101F1_003.ab1   212 
  618  C UCD009R_G01_BE498566Td07P001B06P021B101R1_003.ab1    87 
  626    UCD009F_G01_BE498566Td07P001B06P021B101F1_003.ab1   584 
  634  C UCD009R_G01_BE498566Td07P001B06P021B101R1_003.ab1    71 
  638    UCD009F_G01_BE498566Td07P001B06P021B101F1_003.ab1   596 
  650  C UCD009R_G01_BE498566Td07P001B06P021B101R1_003.ab1    55 
  654    UCD009F_G01_BE498566Td07P001B06P021B101F1_003.ab1   612 
Contig length: old 765, new 765

Contig length: old 765, new 765
New start: 0