No. words: 1428; after pruning: 1402


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.5 (1,1:660)  634  0.30 0.00 0.00  UCD009F_H01_BE498566Td08P001B06P021B101F1_001.ab1        1   661 (61)  C UCD009R_H01_BE498566Td08P001B06P021B101R1_001.ab1   (45)   661     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  326 nodes

 165 str. conn. components

Path
    1  C UCD009R_H01_BE498566Td08P001B06P021B101R1_001.ab1   706 
   57    UCD009F_H01_BE498566Td08P001B06P021B101F1_001.ab1    12 
   77  C UCD009R_H01_BE498566Td08P001B06P021B101R1_001.ab1   630 
   85    UCD009F_H01_BE498566Td08P001B06P021B101F1_001.ab1    40 
  185  C UCD009R_H01_BE498566Td08P001B06P021B101R1_001.ab1   522 
  189    UCD009F_H01_BE498566Td08P001B06P021B101F1_001.ab1   144 
  243  C UCD009R_H01_BE498566Td08P001B06P021B101R1_001.ab1   464 
  247    UCD009F_H01_BE498566Td08P001B06P021B101F1_001.ab1   202 
  620  C UCD009R_H01_BE498566Td08P001B06P021B101R1_001.ab1    87 
  624    UCD009F_H01_BE498566Td08P001B06P021B101F1_001.ab1   579 
  636  C UCD009R_H01_BE498566Td08P001B06P021B101R1_001.ab1    71 
  640    UCD009F_H01_BE498566Td08P001B06P021B101F1_001.ab1   595 
  652  C UCD009R_H01_BE498566Td08P001B06P021B101R1_001.ab1    55 
  656    UCD009F_H01_BE498566Td08P001B06P021B101F1_001.ab1   611 
Contig length: old 767, new 767

Contig length: old 767, new 767
New start: 0