No. words: 1448; after pruning: 1422


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.1 (1,1:681)  660  0.00 0.00 0.00  UCD009F_A02_BE498566Td09P001B06P021B101F1_016.ab1        1   682 (41)  C UCD009R_A02_BE498566Td09P001B06P021B101R1_016.ab1   (43)   682     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  342 nodes

 173 str. conn. components

Path
    1  C UCD009R_A02_BE498566Td09P001B06P021B101R1_016.ab1   725 
   59    UCD009F_A02_BE498566Td09P001B06P021B101F1_016.ab1    16 
  143  C UCD009R_A02_BE498566Td09P001B06P021B101R1_016.ab1   583 
  147    UCD009F_A02_BE498566Td09P001B06P021B101F1_016.ab1   104 
  183  C UCD009R_A02_BE498566Td09P001B06P021B101R1_016.ab1   543 
  187    UCD009F_A02_BE498566Td09P001B06P021B101F1_016.ab1   144 
  211  C UCD009R_A02_BE498566Td09P001B06P021B101R1_016.ab1   515 
  215    UCD009F_A02_BE498566Td09P001B06P021B101F1_016.ab1   172 
  243  C UCD009R_A02_BE498566Td09P001B06P021B101R1_016.ab1   483 
  247    UCD009F_A02_BE498566Td09P001B06P021B101F1_016.ab1   204 
  251  C UCD009R_A02_BE498566Td09P001B06P021B101R1_016.ab1   475 
  259    UCD009F_A02_BE498566Td09P001B06P021B101F1_016.ab1   216 
  607  C UCD009R_A02_BE498566Td09P001B06P021B101R1_016.ab1   119 
  611    UCD009F_A02_BE498566Td09P001B06P021B101F1_016.ab1   568 
  619  C UCD009R_A02_BE498566Td09P001B06P021B101R1_016.ab1   107 
  627    UCD009F_A02_BE498566Td09P001B06P021B101F1_016.ab1   584 
  635  C UCD009R_A02_BE498566Td09P001B06P021B101R1_016.ab1    91 
  639    UCD009F_A02_BE498566Td09P001B06P021B101F1_016.ab1   596 
  647  C UCD009R_A02_BE498566Td09P001B06P021B101R1_016.ab1    79 
  663    UCD009F_A02_BE498566Td09P001B06P021B101F1_016.ab1   620 
Contig length: old 766, new 766

Contig length: old 766, new 766
New start: 0