No. words: 1444; after pruning: 1418


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.9 (1,1:679)  649  0.00 0.15 0.15  UCD009F_B02_BE498566Td10P001B06P021B101F1_014.ab1        1   680 (40)  C UCD009R_B02_BE498566Td10P001B06P021B101R1_014.ab1   (44)   680     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  336 nodes

 170 str. conn. components

Path
    1  C UCD009R_B02_BE498566Td10P001B06P021B101R1_014.ab1   724 
   56    UCD009F_B02_BE498566Td10P001B06P021B101F1_014.ab1    12 
   76  C UCD009R_B02_BE498566Td10P001B06P021B101R1_014.ab1   649 
   86    UCD009F_B02_BE498566Td10P001B06P021B101F1_014.ab1    41 
   98  C UCD009R_B02_BE498566Td10P001B06P021B101R1_014.ab1   627 
  102    UCD009F_B02_BE498566Td10P001B06P021B101F1_014.ab1    57 
  122  C UCD009R_B02_BE498566Td10P001B06P021B101R1_014.ab1   603 
  126    UCD009F_B02_BE498566Td10P001B06P021B101F1_014.ab1    81 
  142  C UCD009R_B02_BE498566Td10P001B06P021B101R1_014.ab1   583 
  150    UCD009F_B02_BE498566Td10P001B06P021B101F1_014.ab1   105 
  254  C UCD009R_B02_BE498566Td10P001B06P021B101R1_014.ab1   471 
  258    UCD009F_B02_BE498566Td10P001B06P021B101F1_014.ab1   213 
  434  C UCD009R_B02_BE498566Td10P001B06P021B101R1_014.ab1   291 
  438    UCD009F_B02_BE498566Td10P001B06P021B101F1_014.ab1   393 
  486  C UCD009R_B02_BE498566Td10P001B06P021B101R1_014.ab1   239 
  494    UCD009F_B02_BE498566Td10P001B06P021B101F1_014.ab1   449 
  618  C UCD009R_B02_BE498566Td10P001B06P021B101R1_014.ab1   107 
  626    UCD009F_B02_BE498566Td10P001B06P021B101F1_014.ab1   581 
  650  C UCD009R_B02_BE498566Td10P001B06P021B101R1_014.ab1    75 
  658    UCD009F_B02_BE498566Td10P001B06P021B101F1_014.ab1   613 
Contig length: old 764, new 765

Contig length: old 765, new 765
New start: 0