No. words: 1020; after pruning: 994


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   20    0.0 3.1 (1,1:334)  293  1.59 0.00 0.32  UCD018F_A02_BE498730LD12P028G02G081F1_016.ab1       21   335 (178)  C UCD018R_A02_BE498730LD12P028G02G081R1_016.ab1   (193)   314     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
20       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  138 nodes

 71 str. conn. components

Path
    1  C UCD018R_A02_BE498730LD12P028G02G081R1_016.ab1   507 
  404    UCD018F_A02_BE498730LD12P028G02G081F1_016.ab1   231 
  408  C UCD018R_A02_BE498730LD12P028G02G081R1_016.ab1   100 
  487    UCD018F_A02_BE498730LD12P028G02G081F1_016.ab1   314 
Contig length: old 685, new 686

Contig length: old 686, new 686
New start: 0 
S Change at: 200; seg lengths: entry 1, contig 1