No. words: 1340; after pruning: 1314


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.0 (1,1:1107)  213  0.43 0.43 0.00  UCD017F_B12_BE498730TU02P028G02G081F1_094.ab1      415   645 (0)  C UCD017R_B12_BE498730TU02P028G02G081R1_094.ab1   (0)   695   464 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  112 nodes

 58 str. conn. components

Path
    1    UCD017F_B12_BE498730TU02P028G02G081F1_094.ab1     1 
  539  C UCD017R_B12_BE498730TU02P028G02G081R1_094.ab1   570 
  551    UCD017F_B12_BE498730TU02P028G02G081F1_094.ab1   551 
  559  C UCD017R_B12_BE498730TU02P028G02G081R1_094.ab1   550 
  571    UCD017F_B12_BE498730TU02P028G02G081F1_094.ab1   571 
  575  C UCD017R_B12_BE498730TU02P028G02G081R1_094.ab1   534 
Contig length: old 1108, new 1108

Contig length: old 1108, new 1108
New start: 0